Difference between revisions of "Ec-22 001610"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=TRNA-PSEUDOURIDINE-SYNTHASE-I-RXN TRNA-PSEUDOURIDINE-SYNTHASE-I-RXN] == * direction: ** LEFT-TO-RIG...")
(Created page with "Category:Gene == Gene Ec-22_001610 == * left end position: ** 1887020 * transcription direction: ** POSITIVE * right end position: ** 1891387 * centisome position: ** 41.7...")
 
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=TRNA-PSEUDOURIDINE-SYNTHASE-I-RXN TRNA-PSEUDOURIDINE-SYNTHASE-I-RXN] ==
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== Gene Ec-22_001610 ==
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* direction:
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* left end position:
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** LEFT-TO-RIGHT
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** 1887020
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* common name:
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* transcription direction:
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** pseudouridine synthase
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** POSITIVE
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** Pseudouridine synthase I, TruA, C-terminal
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* right end position:
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* ec number:
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** 1891387
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** [http://enzyme.expasy.org/EC/5.4.99.12 EC-5.4.99.12]
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* centisome position:
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** 41.786587   
 
* Synonym(s):
 
* Synonym(s):
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** Esi_0084_0098
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** Esi0084_0098
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[RXN0-6359]]
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** 1 [[tRNA-uridine-38-40]][c] '''=>''' 1 [[tRNA-pseudouridine-38-40]][c]
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* With common name(s):
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** 1 a uridine38-40 in tRNA[c] '''=>''' 1 a pseudouridine38-40 in tRNA[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Ec-05_002890]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: GO-TERM
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* Gene: [[Ec-22_001870]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: GO-TERM
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* Gene: [[Ec-28_003620]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: GO-TERM
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* Gene: [[Ec-14_000160]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: GO-TERM
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* Gene: [[Ec-07_000310]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: GO-TERM
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* Gene: [[Ec-27_004410]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: EC-NUMBER
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* Gene: [[Ec-07_006750]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: GO-TERM
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* Gene: [[Ec-26_004180]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: GO-TERM
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* Gene: [[Ec-01_000690]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: GO-TERM
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* Gene: [[Ec-27_005240]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: GO-TERM
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* Gene: [[Ec-06_009680]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: GO-TERM
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* Gene: [[Ec-09_003890]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: GO-TERM
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* Gene: [[Ec-14_001350]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: GO-TERM
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* Gene: [[Ec-08_003150]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: GO-TERM
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* Gene: [[Ec-14_001540]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: GO-TERM
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* Gene: [[Ec-14_001340]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: GO-TERM
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* Gene: [[Ec-06_003220]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: GO-TERM
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* Gene: [[Ec-20_000700]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: GO-TERM
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* Gene: [[Ec-04_001540]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: GO-TERM
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* Gene: [[Ec-06_004490]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: GO-TERM
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* Gene: [[Ec-17_003530]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: GO-TERM
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* Gene: [[Ec-21_005910]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: GO-TERM
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* Gene: [[Ec-20_003420]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: GO-TERM
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* Gene: [[Ec-19_003680]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: GO-TERM
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* Gene: [[Ec-01_008790]]
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** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: GO-TERM
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*** Assignment: go-term
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== Pathways  ==
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* Reaction: [[THIOSULFATE-SULFURTRANSFERASE-RXN]]
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== Reconstruction information  ==
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* Category: [[annotation]]
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** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
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*** Assignment: go-term
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== Pathways associated ==
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* [[PWY-5350]]
 
== External links  ==
 
== External links  ==
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* LIGAND-RXN:
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{{#set: left end position=1887020}}
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** [http://www.genome.jp/dbget-bin/www_bget?R03020 R03020]
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{{#set: transcription direction=POSITIVE}}
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* UNIPROT:
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{{#set: right end position=1891387}}
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** [http://www.uniprot.org/uniprot/Q59069 Q59069]
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{{#set: centisome position=41.786587    }}
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** [http://www.uniprot.org/uniprot/P47428 P47428]
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{{#set: common name=Esi_0084_0098|Esi0084_0098}}
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** [http://www.uniprot.org/uniprot/P45291 P45291]
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{{#set: reaction associated=RXN0-6359|THIOSULFATE-SULFURTRANSFERASE-RXN}}
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** [http://www.uniprot.org/uniprot/Q45557 Q45557]
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{{#set: pathway associated=PWY-5350}}
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** [http://www.uniprot.org/uniprot/Q50291 Q50291]
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** [http://www.uniprot.org/uniprot/P53167 P53167]
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** [http://www.uniprot.org/uniprot/Q12211 Q12211]
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** [http://www.uniprot.org/uniprot/P73295 P73295]
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** [http://www.uniprot.org/uniprot/P07649 P07649]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=pseudouridine synthase}}
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{{#set: common name=Pseudouridine synthase I, TruA, C-terminal}}
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{{#set: ec number=EC-5.4.99.12}}
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{{#set: gene associated=Ec-05_002890|Ec-22_001870|Ec-28_003620|Ec-14_000160|Ec-07_000310|Ec-27_004410|Ec-07_006750|Ec-26_004180|Ec-01_000690|Ec-27_005240|Ec-06_009680|Ec-09_003890|Ec-14_001350|Ec-08_003150|Ec-14_001540|Ec-14_001340|Ec-06_003220|Ec-20_000700|Ec-04_001540|Ec-06_004490|Ec-17_003530|Ec-21_005910|Ec-20_003420|Ec-19_003680|Ec-01_008790}}
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−
{{#set: in pathway=}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome}}
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{{#set: reconstruction tool=pathwaytools}}
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Latest revision as of 19:21, 21 March 2018

Gene Ec-22_001610

  • left end position:
    • 1887020
  • transcription direction:
    • POSITIVE
  • right end position:
    • 1891387
  • centisome position:
    • 41.786587
  • Synonym(s):
    • Esi_0084_0098
    • Esi0084_0098

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=Ec-22_001610&oldid=26302"