Difference between revisions of "RXN-13008"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ASPARTATE--TRNA-LIGASE-RXN ASPARTATE--TRNA-LIGASE-RXN] == * direction: ** LEFT-TO-RIGHT * common na...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13008 RXN-13008] == * direction: ** REVERSIBLE * common name: ** NAD(P)-binding domain * ec num...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ASPARTATE--TRNA-LIGASE-RXN ASPARTATE--TRNA-LIGASE-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13008 RXN-13008] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 
* common name:
 
* common name:
−
** Aspartyl-tRNA synthetases
+
** NAD(P)-binding domain
−
** Aminoacyl-tRNA synthetase, class II (D/K/N)-like
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/6.1.1.12 EC-6.1.1.12]
+
** [http://enzyme.expasy.org/EC/2.3.1.86 EC-2.3.1.86]
 +
** [http://enzyme.expasy.org/EC/2.3.1.85 EC-2.3.1.85]
 +
** [http://enzyme.expasy.org/EC/1.1.1.100 EC-1.1.1.100]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[ASP-tRNAs]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[L-ASPARTATE]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Charged-ASP-tRNAs]][c] '''+''' 1 [[PPI]][c]
+
** 1 [[3-HYDROXY-DOCOSAPENTAENOYL-ACP]][c] '''+''' 1 [[NADP]][c] '''<=>''' 1 [[NADPH]][c] '''+''' 1 [[3-OXO-EICOSAPENTAENOYL-ACP]][c] '''+''' 1 [[PROTON]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 tRNAasp[c] '''+''' 1 ATP[c] '''+''' 1 L-aspartate[c] '''+''' 1 H+[c] '''=>''' 1 AMP[c] '''+''' 1 L-aspartyl-tRNAasp[c] '''+''' 1 diphosphate[c]
+
** 1 a (3R)-3-hydroxy-docosapentaenoyl-[acp][c] '''+''' 1 NADP+[c] '''<=>''' 1 NADPH[c] '''+''' 1 a 3-oxo-docosapentaenoyl [acp][c] '''+''' 1 H+[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[Ec-06_003810]]
+
* Gene: [[Ec-01_007100]]
−
** Source: [[annotation-esiliculosus_genome]]
+
−
*** Assignment: EC-NUMBER
+
−
* Gene: [[Ec-19_005440]]
+
 
** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
−
* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
 
−
** '''21''' reactions found over '''21''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[annotation]]
 
* Category: [[annotation]]
Line 32: Line 28:
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: direction=REVERSIBLE}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19649 19649]
+
{{#set: common name=NAD(P)-binding domain}}
−
* LIGAND-RXN:
+
{{#set: ec number=EC-2.3.1.86}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R05577 R05577]
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{{#set: ec number=EC-2.3.1.85}}
−
* UNIPROT:
+
{{#set: ec number=EC-1.1.1.100}}
−
** [http://www.uniprot.org/uniprot/P56459 P56459]
+
{{#set: gene associated=Ec-01_007100}}
−
** [http://www.uniprot.org/uniprot/O26328 O26328]
+
{{#set: in pathway=}}
−
** [http://www.uniprot.org/uniprot/O83950 O83950]
+
−
** [http://www.uniprot.org/uniprot/Q58950 Q58950]
+
−
** [http://www.uniprot.org/uniprot/Q9ZLL9 Q9ZLL9]
+
−
** [http://www.uniprot.org/uniprot/O32038 O32038]
+
−
** [http://www.uniprot.org/uniprot/O67589 O67589]
+
−
** [http://www.uniprot.org/uniprot/P43817 P43817]
+
−
** [http://www.uniprot.org/uniprot/O51402 O51402]
+
−
** [http://www.uniprot.org/uniprot/Q9CE80 Q9CE80]
+
−
** [http://www.uniprot.org/uniprot/Q9ZE17 Q9ZE17]
+
−
** [http://www.uniprot.org/uniprot/Q9X1F4 Q9X1F4]
+
−
** [http://www.uniprot.org/uniprot/Q9JT23 Q9JT23]
+
−
** [http://www.uniprot.org/uniprot/O58776 O58776]
+
−
** [http://www.uniprot.org/uniprot/O84546 O84546]
+
−
** [http://www.uniprot.org/uniprot/Q9Z7P2 Q9Z7P2]
+
−
** [http://www.uniprot.org/uniprot/Q9PHM7 Q9PHM7]
+
−
** [http://www.uniprot.org/uniprot/P47282 P47282]
+
−
** [http://www.uniprot.org/uniprot/Q51422 Q51422]
+
−
** [http://www.uniprot.org/uniprot/Q03577 Q03577]
+
−
** [http://www.uniprot.org/uniprot/P36429 P36429]
+
−
** [http://www.uniprot.org/uniprot/P75068 P75068]
+
−
** [http://www.uniprot.org/uniprot/P73851 P73851]
+
−
** [http://www.uniprot.org/uniprot/Q48979 Q48979]
+
−
** [http://www.uniprot.org/uniprot/Q49028 Q49028]
+
−
** [http://www.uniprot.org/uniprot/P04802 P04802]
+
−
** [http://www.uniprot.org/uniprot/P15179 P15179]
+
−
** [http://www.uniprot.org/uniprot/P21889 P21889]
+
−
** [http://www.uniprot.org/uniprot/P14868 P14868]
+
−
** [http://www.uniprot.org/uniprot/P15178 P15178]
+
−
** [http://www.uniprot.org/uniprot/O81892 O81892]
+
−
** [http://www.uniprot.org/uniprot/O74407 O74407]
+
−
** [http://www.uniprot.org/uniprot/O07683 O07683]
+
−
{{#set: direction=LEFT-TO-RIGHT}}
+
−
{{#set: common name=Aspartyl-tRNA synthetases}}
+
−
{{#set: common name=Aminoacyl-tRNA synthetase, class II (D/K/N)-like}}
+
−
{{#set: ec number=EC-6.1.1.12}}
+
−
{{#set: gene associated=Ec-06_003810|Ec-19_005440}}
+
−
{{#set: in pathway=TRNA-CHARGING-PWY}}
+
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction source=annotation-esiliculosus_genome}}
 
{{#set: reconstruction source=annotation-esiliculosus_genome}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 19:22, 21 March 2018

Reaction RXN-13008

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=RXN-13008&oldid=26405"