Difference between revisions of "Ec-07 003680"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9003 RXN-9003] == * direction: ** LEFT-TO-RIGHT * common name: ** 4-hydroxybenzoate nonaprenylt...")
 
(Created page with "Category:Gene == Gene Ec-07_003680 == * left end position: ** 3727476 * transcription direction: ** POSITIVE * right end position: ** 3738628 * centisome position: ** 48.2...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9003 RXN-9003] ==
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== Gene Ec-07_003680 ==
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* direction:
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* left end position:
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** LEFT-TO-RIGHT
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** 3727476
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* common name:
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* transcription direction:
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** 4-hydroxybenzoate nonaprenyltransferase
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** POSITIVE
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* ec number:
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* right end position:
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** [http://enzyme.expasy.org/EC/2.5.1.39 EC-2.5.1.39]
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** 3738628
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* centisome position:
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** 48.268173   
 
* Synonym(s):
 
* Synonym(s):
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** Esi_0046_0098
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** Esi0046_0098
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[ADENYL-KIN-RXN]]
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** 1 [[4-hydroxybenzoate]][c] '''+''' 1 [[ALL-TRANS-HEXAPRENYL-DIPHOSPHATE]][c] '''=>''' 1 [[3-HEXAPRENYL-4-HYDROXYBENZOATE]][c] '''+''' 1 [[PPI]][c]
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** Source: [[annotation-esiliculosus_genome]]
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* With common name(s):
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*** Assignment: automated-name-match
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** 1 4-hydroxybenzoate[c] '''+''' 1 all-trans-hexaprenyl diphosphate[c] '''=>''' 1 3-hexaprenyl-4-hydroxybenzoate[c] '''+''' 1 diphosphate[c]
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* Reaction: [[RXN-11832]]
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** Source: [[annotation-esiliculosus_genome]]
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== Genes associated with this reaction  ==
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*** Assignment: automated-name-match
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Genes have been associated with this reaction based on different elements listed below.
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* Reaction: [[RXN-12002]]
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* [[Ec-24_003910]]
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** Source: [[annotation-esiliculosus_genome]]
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** [[pantograph]]-[[aragem]]
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*** Assignment: automated-name-match
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* [[Ec-18_000990]]
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* Reaction: [[RXN-7913]]
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** [[pantograph]]-[[aragem]]
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** Source: [[annotation-esiliculosus_genome]]
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* [[Ec-00_007360]]
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*** Assignment: automated-name-match
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** ESILICULOSUS_GENOME
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== Pathways associated ==
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***AUTOMATED-NAME-MATCH
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* [[PWY-7219]]
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* [[Ec-08_002270]]
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* [[PWY-7205]]
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** [[pantograph]]-[[aragem]]
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* [[PWY-7197]]
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* [[Ec-27_002140]]
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* [[PWY-7176]]
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** [[pantograph]]-[[aragem]]
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* [[Ec-17_003520]]
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** [[pantograph]]-[[aragem]]
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== Pathways  ==
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* [[PWY3O-19]], ubiquinol-6 biosynthesis from 4-hydroxybenzoate (eukaryotic): [http://metacyc.org/META/NEW-IMAGE?object=PWY3O-19 PWY3O-19]
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** '''1''' reactions found over '''8''' reactions in the full pathway
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* [[PWY-7235]], superpathway of ubiquinol-6 biosynthesis (eukaryotic): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7235 PWY-7235]
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** '''2''' reactions found over '''7''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[aragem]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[esiliculosus_genome]]
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== External links  ==
 
== External links  ==
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* LIGAND-RXN:
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{{#set: left end position=3727476}}
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** [http://www.genome.jp/dbget-bin/www_bget?R05616 R05616]
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{{#set: transcription direction=POSITIVE}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: right end position=3738628}}
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{{#set: common name=4-hydroxybenzoate nonaprenyltransferase}}
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{{#set: centisome position=48.268173    }}
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{{#set: ec number=EC-2.5.1.39}}
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{{#set: common name=Esi_0046_0098|Esi0046_0098}}
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{{#set: gene associated=Ec-24_003910|Ec-18_000990|Ec-00_007360|Ec-08_002270|Ec-27_002140|Ec-17_003520}}
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{{#set: reaction associated=ADENYL-KIN-RXN|RXN-11832|RXN-12002|RXN-7913}}
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{{#set: in pathway=PWY3O-19|PWY-7235}}
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{{#set: pathway associated=PWY-7219|PWY-7205|PWY-7197|PWY-7176}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=aragem}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=esiliculosus_genome}}
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Latest revision as of 20:22, 21 March 2018

Gene Ec-07_003680

  • left end position:
    • 3727476
  • transcription direction:
    • POSITIVE
  • right end position:
    • 3738628
  • centisome position:
    • 48.268173
  • Synonym(s):
    • Esi_0046_0098
    • Esi0046_0098

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=Ec-07_003680&oldid=26412"