Difference between revisions of "Ec-07 003680"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9003 RXN-9003] == * direction: ** LEFT-TO-RIGHT * common name: ** 4-hydroxybenzoate nonaprenylt...")
 
(Created page with "Category:Gene == Gene Ec-07_003680 == * left end position: ** 3727476 * transcription direction: ** POSITIVE * right end position: ** 3738628 * centisome position: ** 48.2...")
 
(2 intermediate revisions by the same user not shown)
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Gene]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9003 RXN-9003] ==
+
== Gene Ec-07_003680 ==
−
* direction:
+
* left end position:
−
** LEFT-TO-RIGHT
+
** 3727476
−
* common name:
+
* transcription direction:
−
** 4-hydroxybenzoate nonaprenyltransferase
+
** POSITIVE
−
* ec number:
+
* right end position:
−
** [http://enzyme.expasy.org/EC/2.5.1.39 EC-2.5.1.39]
+
** 3738628
 +
* centisome position:
 +
** 48.268173   
 
* Synonym(s):
 
* Synonym(s):
 +
** Esi_0046_0098
 +
** Esi0046_0098
  
−
== Reaction Formula ==
+
== Reactions associated ==
−
* With identifiers:
+
* Reaction: [[ADENYL-KIN-RXN]]
−
** 1 [[4-hydroxybenzoate]][c] '''+''' 1 [[ALL-TRANS-HEXAPRENYL-DIPHOSPHATE]][c] '''=>''' 1 [[3-HEXAPRENYL-4-HYDROXYBENZOATE]][c] '''+''' 1 [[PPI]][c]
+
** Source: [[annotation-esiliculosus_genome]]
−
* With common name(s):
+
*** Assignment: automated-name-match
−
** 1 4-hydroxybenzoate[c] '''+''' 1 all-trans-hexaprenyl diphosphate[c] '''=>''' 1 3-hexaprenyl-4-hydroxybenzoate[c] '''+''' 1 diphosphate[c]
+
* Reaction: [[RXN-11832]]
−
 
+
** Source: [[annotation-esiliculosus_genome]]
−
== Genes associated with this reaction  ==
+
*** Assignment: automated-name-match
−
Genes have been associated with this reaction based on different elements listed below.
+
* Reaction: [[RXN-12002]]
−
* [[Ec-24_003910]]
+
** Source: [[annotation-esiliculosus_genome]]
−
** [[pantograph]]-[[aragem]]
+
*** Assignment: automated-name-match
−
* [[Ec-18_000990]]
+
* Reaction: [[RXN-7913]]
−
** [[pantograph]]-[[aragem]]
+
** Source: [[annotation-esiliculosus_genome]]
−
* [[Ec-00_007360]]
+
*** Assignment: automated-name-match
−
** ESILICULOSUS_GENOME
+
== Pathways associated ==
−
***AUTOMATED-NAME-MATCH
+
* [[PWY-7219]]
−
* [[Ec-08_002270]]
+
* [[PWY-7205]]
−
** [[pantograph]]-[[aragem]]
+
* [[PWY-7197]]
−
* [[Ec-27_002140]]
+
* [[PWY-7176]]
−
** [[pantograph]]-[[aragem]]
+
−
* [[Ec-17_003520]]
+
−
** [[pantograph]]-[[aragem]]
+
−
== Pathways  ==
+
−
* [[PWY3O-19]], ubiquinol-6 biosynthesis from 4-hydroxybenzoate (eukaryotic): [http://metacyc.org/META/NEW-IMAGE?object=PWY3O-19 PWY3O-19]
+
−
** '''1''' reactions found over '''8''' reactions in the full pathway
+
−
* [[PWY-7235]], superpathway of ubiquinol-6 biosynthesis (eukaryotic): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7235 PWY-7235]
+
−
** '''2''' reactions found over '''7''' reactions in the full pathway
+
−
== Reconstruction information  ==
+
−
* [[orthology]]:
+
−
** [[pantograph]]:
+
−
*** [[aragem]]
+
−
* [[annotation]]:
+
−
** [[pathwaytools]]:
+
−
*** [[esiliculosus_genome]]
+
 
== External links  ==
 
== External links  ==
−
* LIGAND-RXN:
+
{{#set: left end position=3727476}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R05616 R05616]
+
{{#set: transcription direction=POSITIVE}}
−
{{#set: direction=LEFT-TO-RIGHT}}
+
{{#set: right end position=3738628}}
−
{{#set: common name=4-hydroxybenzoate nonaprenyltransferase}}
+
{{#set: centisome position=48.268173    }}
−
{{#set: ec number=EC-2.5.1.39}}
+
{{#set: common name=Esi_0046_0098|Esi0046_0098}}
−
{{#set: gene associated=Ec-24_003910|Ec-18_000990|Ec-00_007360|Ec-08_002270|Ec-27_002140|Ec-17_003520}}
+
{{#set: reaction associated=ADENYL-KIN-RXN|RXN-11832|RXN-12002|RXN-7913}}
−
{{#set: in pathway=PWY3O-19|PWY-7235}}
+
{{#set: pathway associated=PWY-7219|PWY-7205|PWY-7197|PWY-7176}}
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=aragem}}
+
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=esiliculosus_genome}}
+

Latest revision as of 19:22, 21 March 2018

Gene Ec-07_003680

  • left end position:
    • 3727476
  • transcription direction:
    • POSITIVE
  • right end position:
    • 3738628
  • centisome position:
    • 48.268173
  • Synonym(s):
    • Esi_0046_0098
    • Esi0046_0098

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=Ec-07_003680&oldid=26412"