Difference between revisions of "Ec-24 000520"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3-ISOPROPYLMALDEHYDROG-RXN 3-ISOPROPYLMALDEHYDROG-RXN] == * direction: ** REVERSIBLE * common name:...")
 
(Created page with "Category:Gene == Gene Ec-24_000520 == * left end position: ** 626189 * transcription direction: ** POSITIVE * right end position: ** 638474 * centisome position: ** 12.554...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3-ISOPROPYLMALDEHYDROG-RXN 3-ISOPROPYLMALDEHYDROG-RXN] ==
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== Gene Ec-24_000520 ==
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* direction:
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* left end position:
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** REVERSIBLE
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** 626189
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* common name:
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* transcription direction:
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** 3-isopropylmalate dehydrogenase
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** POSITIVE
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* right end position:
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** 638474
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* centisome position:
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** 12.554735   
 
* Synonym(s):
 
* Synonym(s):
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** β-isopropylmalic enzyme
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** Esi_0019_0014
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** threo-Ds-3-isopropylmalate dehydrogenase
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** Esi0019_0014
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[ACID-PHOSPHATASE-RXN]]
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** 1 [[2-D-THREO-HYDROXY-3-CARBOXY-ISOCAPROATE]][c] '''+''' 1 [[NAD]][c] '''<=>''' 1 [[NADH]][c] '''+''' 1 [[CPD-7100]][c] '''+''' 1 [[PROTON]][c]
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** Source: [[annotation-esiliculosus_genome]]
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* With common name(s):
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*** Assignment: go-term
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** 1 (2R,3S)-3-isopropylmalate[c] '''+''' 1 NAD+[c] '''<=>''' 1 NADH[c] '''+''' 1 (2S)-2-isopropyl-3-oxosuccinate[c] '''+''' 1 H+[c]
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* Reaction: [[RXN-5822]]
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** Source: [[annotation-esiliculosus_genome]]
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== Genes associated with this reaction  ==
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*** Assignment: go-term
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Genes have been associated with this reaction based on different elements listed below.
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== Pathways associated ==
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* [[Ec-16_002120]]
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* [[PWY-6348]]
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** ESILICULOSUS_GENOME
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* [[PWY-5083]]
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***EC-NUMBER
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* [[NADPHOS-DEPHOS-PWY]]
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** [[pantograph]]-[[aragem]]
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* [[NAD-BIOSYNTHESIS-II]]
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== Pathways  ==
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* [[LEUSYN-PWY]], L-leucine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=LEUSYN-PWY LEUSYN-PWY]
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** '''6''' reactions found over '''6''' reactions in the full pathway
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* [[PWY-6871]], 3-methylbutanol biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6871 PWY-6871]
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** '''5''' reactions found over '''7''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[aragem]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[esiliculosus_genome]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: left end position=626189}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10892 10892]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: right end position=638474}}
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** [http://www.genome.jp/dbget-bin/www_bget?R04426 R04426]
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{{#set: centisome position=12.554735    }}
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* UNIPROT:
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{{#set: common name=Esi_0019_0014|Esi0019_0014}}
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** [http://www.uniprot.org/uniprot/P05644 P05644]
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{{#set: reaction associated=ACID-PHOSPHATASE-RXN|RXN-5822}}
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** [http://www.uniprot.org/uniprot/P05645 P05645]
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{{#set: pathway associated=PWY-6348|PWY-5083|NADPHOS-DEPHOS-PWY|NAD-BIOSYNTHESIS-II}}
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** [http://www.uniprot.org/uniprot/Q01987 Q01987]
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** [http://www.uniprot.org/uniprot/Q00412 Q00412]
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** [http://www.uniprot.org/uniprot/P08791 P08791]
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** [http://www.uniprot.org/uniprot/P30125 P30125]
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** [http://www.uniprot.org/uniprot/Q9PLW0 Q9PLW0]
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** [http://www.uniprot.org/uniprot/O66607 O66607]
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** [http://www.uniprot.org/uniprot/P12010 P12010]
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** [http://www.uniprot.org/uniprot/P04173 P04173]
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** [http://www.uniprot.org/uniprot/Q5SIY4 Q5SIY4]
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** [http://www.uniprot.org/uniprot/P24098 P24098]
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** [http://www.uniprot.org/uniprot/Q9JU79 Q9JU79]
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** [http://www.uniprot.org/uniprot/P43860 P43860]
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** [http://www.uniprot.org/uniprot/P41019 P41019]
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** [http://www.uniprot.org/uniprot/P54354 P54354]
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** [http://www.uniprot.org/uniprot/Q56268 Q56268]
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** [http://www.uniprot.org/uniprot/P29102 P29102]
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** [http://www.uniprot.org/uniprot/P37412 P37412]
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** [http://www.uniprot.org/uniprot/P23390 P23390]
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** [http://www.uniprot.org/uniprot/P29696 P29696]
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** [http://www.uniprot.org/uniprot/P41766 P41766]
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** [http://www.uniprot.org/uniprot/Q02143 Q02143]
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** [http://www.uniprot.org/uniprot/P34733 P34733]
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** [http://www.uniprot.org/uniprot/P50180 P50180]
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** [http://www.uniprot.org/uniprot/Q12591 Q12591]
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** [http://www.uniprot.org/uniprot/Q12590 Q12590]
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** [http://www.uniprot.org/uniprot/Q12592 Q12592]
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** [http://www.uniprot.org/uniprot/P07139 P07139]
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** [http://www.uniprot.org/uniprot/P41926 P41926]
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** [http://www.uniprot.org/uniprot/P48012 P48012]
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** [http://www.uniprot.org/uniprot/P87256 P87256]
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** [http://www.uniprot.org/uniprot/P87257 P87257]
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** [http://www.uniprot.org/uniprot/P73960 P73960]
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** [http://www.uniprot.org/uniprot/O86504 O86504]
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** [http://www.uniprot.org/uniprot/O85837 O85837]
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** [http://www.uniprot.org/uniprot/P18869 P18869]
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** [http://www.uniprot.org/uniprot/P34738 P34738]
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{{#set: direction=REVERSIBLE}}
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{{#set: common name=3-isopropylmalate dehydrogenase}}
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{{#set: common name=&beta;-isopropylmalic enzyme|threo-Ds-3-isopropylmalate dehydrogenase}}
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{{#set: gene associated=Ec-16_002120}}
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{{#set: in pathway=LEUSYN-PWY|PWY-6871}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=aragem}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=esiliculosus_genome}}
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Latest revision as of 20:22, 21 March 2018

Gene Ec-24_000520

  • left end position:
    • 626189
  • transcription direction:
    • POSITIVE
  • right end position:
    • 638474
  • centisome position:
    • 12.554735
  • Synonym(s):
    • Esi_0019_0014
    • Esi0019_0014

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=Ec-24_000520&oldid=26439"