Difference between revisions of "RXN-9658"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5971 PWY-5971] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-3...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9658 RXN-9658] == * direction: ** LEFT-TO-RIGHT * common name: ** trans hex-2-enoyl-[acp]-reduc...")
 
(One intermediate revision by the same user not shown)
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[[Category:Pathway]]
+
[[Category:Reaction]]
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5971 PWY-5971] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9658 RXN-9658] ==
* taxonomic range:
+
* direction:
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-33090]
+
** LEFT-TO-RIGHT
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
+
 
* common name:
 
* common name:
** palmitate biosynthesis II (bacteria and plants)
+
** trans hex-2-enoyl-[acp]-reductase
 +
** Glucose/ribitol dehydrogenase
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/1.3.1.9 EC-1.3.1.9]
 
* Synonym(s):
 
* Synonym(s):
** palmitic acid biosynthesis
 
** de novo lipogenesis
 
  
== Reaction(s) found ==
+
== Reaction Formula ==
'''28''' reactions found over '''31''' reactions in the full pathway
+
* With identifiers:
* [[4.2.1.58-RXN]]
+
** 1 [[PROTON]][c] '''+''' 1 [[Hex-2-enoyl-ACPs]][c] '''+''' 1 [[NADH]][c] '''=>''' 1 [[NAD]][c] '''+''' 1 [[Hexanoyl-ACPs]][c]
** 0 associated gene:
+
* With common name(s):
** 1 reconstruction source(s) associated:
+
** 1 H+[c] '''+''' 1 a trans hex-2-enoyl-[acp][c] '''+''' 1 NADH[c] '''=>''' 1 NAD+[c] '''+''' 1 a hexanoyl-[acyl-carrier-protein][c]
*** [[annotation-esiliculosus_genome]]
+
 
* [[4.2.1.61-RXN]]
+
== Genes associated with this reaction  ==
** 0 associated gene:
+
Genes have been associated with this reaction based on different elements listed below.
** 1 reconstruction source(s) associated:
+
* Gene: [[Ec-27_002470]]
*** [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
+
** Source: [[annotation-esiliculosus_genome]]
* [[RXN-16393]]
+
*** Assignment: EC-NUMBER
** 4 associated gene(s):
+
== Pathways  ==
*** [[Ec-03_003710]]
+
* [[PWY-5971]], palmitate biosynthesis II (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5971 PWY-5971]
*** [[Ec-01_001560]]
+
** '''28''' reactions found over '''31''' reactions in the full pathway
*** [[Ec-12_008720]]
+
== Reconstruction information  ==
*** [[Ec-02_006430]]
+
* Category: [[annotation]]
** 1 reconstruction source(s) associated:
+
** Source: [[annotation-esiliculosus_genome]]
*** [[annotation-esiliculosus_genome]]
+
*** Tool: [[pathwaytools]]
* [[RXN-9514]]
+
** 1 associated gene(s):
+
*** [[Ec-01_007100]]
+
** 1 reconstruction source(s) associated:
+
*** [[annotation-esiliculosus_genome]]
+
* [[RXN-9516]]
+
** 4 associated gene(s):
+
*** [[Ec-27_003480]]
+
*** [[Ec-27_002090]]
+
*** [[Ec-12_000650]]
+
*** [[Ec-12_000640]]
+
** 2 reconstruction source(s) associated:
+
*** [[annotation-esiliculosus_genome]]
+
*** [[orthology-aragem]]
+
* [[RXN-9518]]
+
** 1 associated gene(s):
+
*** [[Ec-01_007100]]
+
** 1 reconstruction source(s) associated:
+
*** [[annotation-esiliculosus_genome]]
+
* [[RXN-9523]]
+
** 4 associated gene(s):
+
*** [[Ec-27_002090]]
+
*** [[Ec-12_000640]]
+
*** [[Ec-12_000650]]
+
*** [[Ec-27_003480]]
+
** 2 reconstruction source(s) associated:
+
*** [[annotation-esiliculosus_genome]]
+
*** [[orthology-aragem]]
+
* [[RXN-9524]]
+
** 1 associated gene(s):
+
*** [[Ec-01_007100]]
+
** 1 reconstruction source(s) associated:
+
*** [[annotation-esiliculosus_genome]]
+
* [[RXN-9527]]
+
** 4 associated gene(s):
+
*** [[Ec-12_000640]]
+
*** [[Ec-27_003480]]
+
*** [[Ec-12_000650]]
+
*** [[Ec-27_002090]]
+
** 2 reconstruction source(s) associated:
+
*** [[annotation-esiliculosus_genome]]
+
*** [[orthology-aragem]]
+
* [[RXN-9528]]
+
** 1 associated gene(s):
+
*** [[Ec-01_007100]]
+
** 1 reconstruction source(s) associated:
+
*** [[annotation-esiliculosus_genome]]
+
* [[RXN-9531]]
+
** 4 associated gene(s):
+
*** [[Ec-27_002090]]
+
*** [[Ec-27_003480]]
+
*** [[Ec-12_000650]]
+
*** [[Ec-12_000640]]
+
** 2 reconstruction source(s) associated:
+
*** [[annotation-esiliculosus_genome]]
+
*** [[orthology-aragem]]
+
* [[RXN-9532]]
+
** 1 associated gene(s):
+
*** [[Ec-01_007100]]
+
** 1 reconstruction source(s) associated:
+
*** [[annotation-esiliculosus_genome]]
+
* [[RXN-9533]]
+
** 0 associated gene:
+
** 1 reconstruction source(s) associated:
+
*** [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
+
* [[RXN-9535]]
+
** 4 associated gene(s):
+
*** [[Ec-27_002090]]
+
*** [[Ec-12_000650]]
+
*** [[Ec-27_003480]]
+
*** [[Ec-12_000640]]
+
** 2 reconstruction source(s) associated:
+
*** [[annotation-esiliculosus_genome]]
+
*** [[orthology-aragem]]
+
* [[RXN-9536]]
+
** 1 associated gene(s):
+
*** [[Ec-01_007100]]
+
** 1 reconstruction source(s) associated:
+
*** [[annotation-esiliculosus_genome]]
+
* [[RXN-9537]]
+
** 0 associated gene:
+
** 1 reconstruction source(s) associated:
+
*** [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
+
* [[RXN-9539]]
+
** 4 associated gene(s):
+
*** [[Ec-12_000650]]
+
*** [[Ec-12_000640]]
+
*** [[Ec-27_002090]]
+
*** [[Ec-27_003480]]
+
** 2 reconstruction source(s) associated:
+
*** [[annotation-esiliculosus_genome]]
+
*** [[orthology-aragem]]
+
* [[RXN-9540]]
+
** 1 associated gene(s):
+
*** [[Ec-01_007100]]
+
** 1 reconstruction source(s) associated:
+
*** [[annotation-esiliculosus_genome]]
+
* [[RXN-9549]]
+
** 0 associated gene:
+
** 1 reconstruction source(s) associated:
+
*** [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
+
* [[RXN-9623]]
+
** 4 associated gene(s):
+
*** [[Ec-01_001560]]
+
*** [[Ec-02_006430]]
+
*** [[Ec-03_003710]]
+
*** [[Ec-12_008720]]
+
** 2 reconstruction source(s) associated:
+
*** [[annotation-esiliculosus_genome]]
+
*** [[orthology-aragem]]
+
* [[RXN-9655]]
+
** 0 associated gene:
+
** 1 reconstruction source(s) associated:
+
*** [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
+
* [[RXN-9657]]
+
** 1 associated gene(s):
+
*** [[Ec-27_002470]]
+
** 1 reconstruction source(s) associated:
+
*** [[annotation-esiliculosus_genome]]
+
* [[RXN-9658]]
+
** 1 associated gene(s):
+
*** [[Ec-27_002470]]
+
** 1 reconstruction source(s) associated:
+
*** [[annotation-esiliculosus_genome]]
+
* [[RXN-9659]]
+
** 1 associated gene(s):
+
*** [[Ec-27_002470]]
+
** 1 reconstruction source(s) associated:
+
*** [[annotation-esiliculosus_genome]]
+
* [[RXN-9660]]
+
** 1 associated gene(s):
+
*** [[Ec-27_002470]]
+
** 1 reconstruction source(s) associated:
+
*** [[annotation-esiliculosus_genome]]
+
* [[RXN-9661]]
+
** 1 associated gene(s):
+
*** [[Ec-27_002470]]
+
** 1 reconstruction source(s) associated:
+
*** [[annotation-esiliculosus_genome]]
+
* [[RXN-9662]]
+
** 1 associated gene(s):
+
*** [[Ec-27_002470]]
+
** 1 reconstruction source(s) associated:
+
*** [[annotation-esiliculosus_genome]]
+
* [[RXN-9663]]
+
** 1 associated gene(s):
+
*** [[Ec-27_002470]]
+
** 1 reconstruction source(s) associated:
+
*** [[annotation-esiliculosus_genome]]
+
== Reaction(s) not found ==
+
* [http://metacyc.org/META/NEW-IMAGE?object=3.1.2.21-RXN 3.1.2.21-RXN]
+
* [http://metacyc.org/META/NEW-IMAGE?object=4.2.1.59-RXN 4.2.1.59-RXN]
+
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-9520 RXN-9520]
+
 
== External links  ==
 
== External links  ==
* ECOCYC:
+
{{#set: direction=LEFT-TO-RIGHT}}
** [http://metacyc.org/ECOLI/NEW-IMAGE?object=PWY-5971 PWY-5971]
+
{{#set: common name=trans hex-2-enoyl-[acp]-reductase}}
{{#set: taxonomic range=TAX-33090}}
+
{{#set: common name=Glucose/ribitol dehydrogenase}}
{{#set: taxonomic range=TAX-2}}
+
{{#set: ec number=EC-1.3.1.9}}
{{#set: common name=palmitate biosynthesis II (bacteria and plants)}}
+
{{#set: gene associated=Ec-27_002470}}
{{#set: common name=palmitic acid biosynthesis|de novo lipogenesis}}
+
{{#set: in pathway=PWY-5971}}
{{#set: reaction found=28}}
+
{{#set: reconstruction category=annotation}}
{{#set: total reaction=31}}
+
{{#set: reconstruction source=annotation-esiliculosus_genome}}
{{#set: completion rate=90.0}}
+
{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 19:22, 21 March 2018

Reaction RXN-9658

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • trans hex-2-enoyl-[acp]-reductase
    • Glucose/ribitol dehydrogenase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 H+[c] + 1 a trans hex-2-enoyl-[acp][c] + 1 NADH[c] => 1 NAD+[c] + 1 a hexanoyl-[acyl-carrier-protein][c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5971, palmitate biosynthesis II (bacteria and plants): PWY-5971
    • 28 reactions found over 31 reactions in the full pathway

Reconstruction information

External links

"trans hex-2-enoyl-[acp]-reductase" cannot be used as a page name in this wiki.