Difference between revisions of "Ec-05 002520"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DTDPKIN-RXN DTDPKIN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** nucleoside diphosphate...")
(Created page with "Category:Gene == Gene Ec-05_002520 == * left end position: ** 4183756 * transcription direction: ** POSITIVE * right end position: ** 4216079 * centisome position: ** 45.9...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DTDPKIN-RXN DTDPKIN-RXN] ==
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== Gene Ec-05_002520 ==
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* direction:
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* left end position:
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** LEFT-TO-RIGHT
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** 4183756
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* common name:
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* transcription direction:
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** nucleoside diphosphate kinase
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** POSITIVE
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** Nucleoside diphosphate kinase
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* right end position:
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* ec number:
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** 4216079
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** [http://enzyme.expasy.org/EC/2.7.4.6 EC-2.7.4.6]
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* centisome position:
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** 45.957645   
 
* Synonym(s):
 
* Synonym(s):
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** Esi_0004_0152
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** Esi0004_0152
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** ICS, mxcD
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[ISOCHORSYN-RXN]]
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** 1 [[TDP]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[TTP]][c]
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** Source: [[annotation-esiliculosus_genome]]
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* With common name(s):
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*** Assignment: ec-number
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** 1 dTDP[c] '''+''' 1 ATP[c] '''=>''' 1 ADP[c] '''+''' 1 dTTP[c]
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* Reaction: [[PEROXID-RXN]]
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** Source: [[annotation-esiliculosus_genome]]
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== Genes associated with this reaction  ==
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*** Assignment: go-term
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Genes have been associated with this reaction based on different elements listed below.
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* Reaction: [[RXN-14240]]
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* [[Ec-26_003930]]
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** Source: [[annotation-esiliculosus_genome]]
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** ESILICULOSUS_GENOME
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*** Assignment: go-term
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***GO-TERM
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* Reaction: [[RXN-15288]]
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* [[Ec-04_001140]]
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** Source: [[annotation-esiliculosus_genome]]
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** ESILICULOSUS_GENOME
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*** Assignment: go-term
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***GO-TERM
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* Reaction: [[RXN-17352]]
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** [[pantograph]]-[[aragem]]
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** Source: [[annotation-esiliculosus_genome]]
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* [[Ec-11_004330]]
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*** Assignment: go-term
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** ESILICULOSUS_GENOME
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* Reaction: [[RXN-8635]]
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***EC-NUMBER
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** [[pantograph]]-[[aragem]]
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* [[Ec-22_003280]]
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** ESILICULOSUS_GENOME
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***GO-TERM
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* [[Ec-11_005170]]
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** ESILICULOSUS_GENOME
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***GO-TERM
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* [[Ec-03_001380]]
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** ESILICULOSUS_GENOME
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***GO-TERM
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* [[Ec-07_000140]]
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** ESILICULOSUS_GENOME
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***GO-TERM
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== Pathways  ==
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* [[PWY-7210]], pyrimidine deoxyribonucleotides biosynthesis from CTP: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7210 PWY-7210]
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** '''8''' reactions found over '''8''' reactions in the full pathway
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* [[PWY-7198]], pyrimidine deoxyribonucleotides de novo biosynthesis IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7198 PWY-7198]
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** '''6''' reactions found over '''7''' reactions in the full pathway
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* [[PWY-7184]], pyrimidine deoxyribonucleotides de novo biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7184 PWY-7184]
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** '''9''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-7187]], pyrimidine deoxyribonucleotides de novo biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7187 PWY-7187]
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** '''6''' reactions found over '''7''' reactions in the full pathway
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* [[PWY-7197]], pyrimidine deoxyribonucleotide phosphorylation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7197 PWY-7197]
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** '''4''' reactions found over '''4''' reactions in the full pathway
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* [[PWY0-166]], superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli): [http://metacyc.org/META/NEW-IMAGE?object=PWY0-166 PWY0-166]
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** '''14''' reactions found over '''17''' reactions in the full pathway
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* [[PWY-6545]], pyrimidine deoxyribonucleotides de novo biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6545 PWY-6545]
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** '''8''' reactions found over '''9''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-aragem]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
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*** Assignment: go-term
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== Pathways associated ==
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* [[PWY-5901]]
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* [[PWY-6406]]
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* [[PWY-6824]]
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* [[PWY-5837]]
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* [[PWY-7445]]
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* [[PWY-5469]]
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* [[PWY-5466]]
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* [[PWY-5461]]
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* [[PWY-7214]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: left end position=4183756}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27682 27682]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: right end position=4216079}}
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** [http://www.genome.jp/dbget-bin/www_bget?R02093 R02093]
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{{#set: centisome position=45.957645    }}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=Esi_0004_0152|Esi0004_0152|ICS, mxcD}}
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{{#set: common name=nucleoside diphosphate kinase}}
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{{#set: reaction associated=ISOCHORSYN-RXN|PEROXID-RXN|RXN-14240|RXN-15288|RXN-17352|RXN-8635}}
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{{#set: common name=Nucleoside diphosphate kinase}}
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{{#set: pathway associated=PWY-5901|PWY-6406|PWY-6824|PWY-5837|PWY-7445|PWY-5469|PWY-5466|PWY-5461|PWY-7214}}
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{{#set: ec number=EC-2.7.4.6}}
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{{#set: gene associated=Ec-26_003930|Ec-04_001140|Ec-11_004330|Ec-22_003280|Ec-11_005170|Ec-03_001380|Ec-07_000140}}
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{{#set: in pathway=PWY-7210|PWY-7198|PWY-7184|PWY-7187|PWY-7197|PWY0-166|PWY-6545}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 20:22, 21 March 2018

Gene Ec-05_002520

  • left end position:
    • 4183756
  • transcription direction:
    • POSITIVE
  • right end position:
    • 4216079
  • centisome position:
    • 45.957645
  • Synonym(s):
    • Esi_0004_0152
    • Esi0004_0152
    • ICS, mxcD

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=Ec-05_002520&oldid=26487"