Difference between revisions of "TYROSINE-AMINOTRANSFERASE-RXN"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6672 PWY-6672] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2] *...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=TYROSINE-AMINOTRANSFERASE-RXN TYROSINE-AMINOTRANSFERASE-RXN] == * direction: ** REVERSIBLE * ec num...")
 
(One intermediate revision by the same user not shown)
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6672 PWY-6672] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=TYROSINE-AMINOTRANSFERASE-RXN TYROSINE-AMINOTRANSFERASE-RXN] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
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** REVERSIBLE
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* common name:
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* ec number:
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** cis-genanyl-CoA degradation
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** [http://enzyme.expasy.org/EC/2.6.1.57 EC-2.6.1.57]
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** [http://enzyme.expasy.org/EC/2.6.1.5 EC-2.6.1.5]
 
* Synonym(s):
 
* Synonym(s):
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** acyclic terpene utilization pathway
 
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''4''' reactions found over '''9''' reactions in the full pathway
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* With identifiers:
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* [[ACETATE--COA-LIGASE-RXN]]
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** 1 [[TYR]][c] '''+''' 1 [[2-KETOGLUTARATE]][c] '''<=>''' 1 [[GLT]][c] '''+''' 1 [[P-HYDROXY-PHENYLPYRUVATE]][c]
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** 1 associated gene(s):
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* With common name(s):
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*** [[Ec-21_006210]]
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** 1 L-tyrosine[c] '''+''' 1 2-oxoglutarate[c] '''<=>''' 1 L-glutamate[c] '''+''' 1 4-hydroxyphenylpyruvate[c]
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** 1 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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== Genes associated with this reaction  ==
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* [[RXN-11917]]
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== Pathways  ==
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** 1 associated gene(s):
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* [[PWY-3581]], (S)-reticuline biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-3581 PWY-3581]
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*** [[Ec-26_003940]]
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** '''3''' reactions found over '''11''' reactions in the full pathway
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** 1 reconstruction source(s) associated:
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* [[TYRFUMCAT-PWY]], L-tyrosine degradation I: [http://metacyc.org/META/NEW-IMAGE?object=TYRFUMCAT-PWY TYRFUMCAT-PWY]
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*** [[orthology-aragem]]
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** '''3''' reactions found over '''5''' reactions in the full pathway
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* [[RXN-11919]]
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* [[PWY-5886]], 4-hydroxyphenylpyruvate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5886 PWY-5886]
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** 1 associated gene(s):
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** '''1''' reactions found over '''1''' reactions in the full pathway
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*** [[Ec-17_000320]]
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* [[PWY-5151]], L-tyrosine degradation II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5151 PWY-5151]
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** 1 reconstruction source(s) associated:
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** '''1''' reactions found over '''2''' reactions in the full pathway
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*** [[orthology-aragem]]
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* [[PWY-7518]], atromentin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7518 PWY-7518]
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* [[RXN-11921]]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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** 1 associated gene(s):
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* [[TYRSYN]], L-tyrosine biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=TYRSYN TYRSYN]
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*** [[Ec-26_003940]]
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** '''3''' reactions found over '''3''' reactions in the full pathway
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** 1 reconstruction source(s) associated:
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* [[PWY3O-4108]], L-tyrosine degradation III: [http://metacyc.org/META/NEW-IMAGE?object=PWY3O-4108 PWY3O-4108]
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*** [[orthology-aragem]]
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** '''2''' reactions found over '''4''' reactions in the full pathway
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== Reaction(s) not found ==
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* [[PWY-5754]], 4-hydroxybenzoate biosynthesis I (eukaryotes): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5754 PWY-5754]
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* [http://metacyc.org/META/NEW-IMAGE?object=4.1.3.26-RXN 4.1.3.26-RXN]
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** '''2''' reactions found over '''6''' reactions in the full pathway
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* [http://metacyc.org/META/NEW-IMAGE?object=GERANOYL-COA-CARBOXYLASE-RXN GERANOYL-COA-CARBOXYLASE-RXN]
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* [[PWY-7514]], L-tyrosine degradation IV (to 4-methylphenol): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7514 PWY-7514]
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* [http://metacyc.org/META/NEW-IMAGE?object=ISOHEXENYLGLUTACONYL-COA-HYDRATASE-RXN ISOHEXENYLGLUTACONYL-COA-HYDRATASE-RXN]
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** '''1''' reactions found over '''3''' reactions in the full pathway
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11918 RXN-11918]
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* [[PWY-5048]], rosmarinic acid biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5048 PWY-5048]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11920 RXN-11920]
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** '''1''' reactions found over '''7''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[gap-filling]]
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** Source: [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
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*** Tool: [[meneco]]
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**** Comment: [[added for gapfilling]]
 
== External links  ==
 
== External links  ==
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* UM-BBD-PWY : cit
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* RHEA:
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* LIGAND-MAP:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15093 15093]
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** [http://www.genome.jp/dbget-bin/www_bget?map00281 map00281]
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* LIGAND-RXN:
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{{#set: taxonomic range=TAX-2}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00734 R00734]
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{{#set: common name=cis-genanyl-CoA degradation}}
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* UNIPROT:
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{{#set: common name=acyclic terpene utilization pathway}}
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** [http://www.uniprot.org/uniprot/P74861 P74861]
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{{#set: reaction found=4}}
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** [http://www.uniprot.org/uniprot/Q9UWK8 Q9UWK8]
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{{#set: total reaction=9}}
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** [http://www.uniprot.org/uniprot/Q9UWK9 Q9UWK9]
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{{#set: completion rate=44.0}}
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** [http://www.uniprot.org/uniprot/P95468 P95468]
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** [http://www.uniprot.org/uniprot/Q9JYA1 Q9JYA1]
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** [http://www.uniprot.org/uniprot/Q9JT83 Q9JT83]
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** [http://www.uniprot.org/uniprot/Q9UZ63 Q9UZ63]
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** [http://www.uniprot.org/uniprot/O58489 O58489]
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** [http://www.uniprot.org/uniprot/O59096 O59096]
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** [http://www.uniprot.org/uniprot/Q9PHA8 Q9PHA8]
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** [http://www.uniprot.org/uniprot/Q9V0L2 Q9V0L2]
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** [http://www.uniprot.org/uniprot/Q9Z7G5 Q9Z7G5]
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** [http://www.uniprot.org/uniprot/Q02636 Q02636]
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** [http://www.uniprot.org/uniprot/O84642 O84642]
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** [http://www.uniprot.org/uniprot/P17735 P17735]
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** [http://www.uniprot.org/uniprot/Q7M4A9 Q7M4A9]
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** [http://www.uniprot.org/uniprot/P04693 P04693]
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** [http://www.uniprot.org/uniprot/P04694 P04694]
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{{#set: direction=REVERSIBLE}}
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{{#set: ec number=EC-2.6.1.57}}
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{{#set: ec number=EC-2.6.1.5}}
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{{#set: in pathway=PWY-3581|TYRFUMCAT-PWY|PWY-5886|PWY-5151|PWY-7518|TYRSYN|PWY3O-4108|PWY-5754|PWY-7514|PWY-5048}}
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{{#set: reconstruction category=gap-filling}}
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{{#set: reconstruction source=gap-filling-gapfilling_solution_with_meneco_draft_medium}}
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{{#set: reconstruction tool=meneco}}
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{{#set: reconstruction comment=added for gapfilling}}

Latest revision as of 19:24, 21 March 2018

Reaction TYROSINE-AMINOTRANSFERASE-RXN

Reaction Formula

Genes associated with this reaction

Pathways

  • PWY-3581, (S)-reticuline biosynthesis I: PWY-3581
    • 3 reactions found over 11 reactions in the full pathway
  • TYRFUMCAT-PWY, L-tyrosine degradation I: TYRFUMCAT-PWY
    • 3 reactions found over 5 reactions in the full pathway
  • PWY-5886, 4-hydroxyphenylpyruvate biosynthesis: PWY-5886
    • 1 reactions found over 1 reactions in the full pathway
  • PWY-5151, L-tyrosine degradation II: PWY-5151
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-7518, atromentin biosynthesis: PWY-7518
    • 1 reactions found over 2 reactions in the full pathway
  • TYRSYN, L-tyrosine biosynthesis I: TYRSYN
    • 3 reactions found over 3 reactions in the full pathway
  • PWY3O-4108, L-tyrosine degradation III: PWY3O-4108
    • 2 reactions found over 4 reactions in the full pathway
  • PWY-5754, 4-hydroxybenzoate biosynthesis I (eukaryotes): PWY-5754
    • 2 reactions found over 6 reactions in the full pathway
  • PWY-7514, L-tyrosine degradation IV (to 4-methylphenol): PWY-7514
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-5048, rosmarinic acid biosynthesis I: PWY-5048
    • 1 reactions found over 7 reactions in the full pathway

Reconstruction information

External links





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