Difference between revisions of "Ec-25 000020"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14386 RXN-14386] == * direction: ** LEFT-TO-RIGHT * common name: ** Aminotransferase class V do...")
(Created page with "Category:Gene == Gene Ec-25_000020 == * left end position: ** 29817 * transcription direction: ** POSITIVE * right end position: ** 37551 * centisome position: ** 0.669903...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14386 RXN-14386] ==
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== Gene Ec-25_000020 ==
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* direction:
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* left end position:
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** LEFT-TO-RIGHT
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** 29817
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* common name:
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* transcription direction:
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** Aminotransferase class V domain
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** POSITIVE
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** Cysteine desulfurase
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* right end position:
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* ec number:
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** 37551
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** [http://enzyme.expasy.org/EC/2.8.1.7 EC-2.8.1.7]
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* centisome position:
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** 0.66990376   
 
* Synonym(s):
 
* Synonym(s):
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** Esi_0322_0005
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** Esi0322_0005
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** GCSL
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[1.8.1.4-RXN]]
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** 1 [[S-CD-S-SP-Complex]][c] '''=>''' 1 [[CD-2S-SP-Complex]][c]
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** Source: [[annotation-esiliculosus_genome]]
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* With common name(s):
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*** Assignment: ec-number
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** 1 an S-sulfanyl-[cysteine desulfurase]-S-sulfanyl-[disordered-form scaffold protein] complex[c] '''=>''' 1 a [cysteine desulfurase]-(S-sulfanyl)2-[disordered-form scaffold protein] complex[c]
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* Reaction: [[2-KETO-ADIPATE-DEHYDROG-RXN]]
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** Source: [[orthology-aragem]]
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== Genes associated with this reaction  ==
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* Reaction: [[2OXOGLUTARATEDEH-RXN]]
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Genes have been associated with this reaction based on different elements listed below.
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** Source: [[annotation-esiliculosus_genome]]
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* [[Ec-21_005640]]
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*** Assignment: automated-name-match
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** ESILICULOSUS_GENOME
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* Reaction: [[2OXOGLUTDECARB-RXN]]
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***EC-NUMBER
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** Source: [[annotation-esiliculosus_genome]]
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* [[Ec-21_003740]]
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*** Assignment: automated-name-match
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** ESILICULOSUS_GENOME
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* Reaction: [[PYRUVDEH-RXN]]
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***EC-NUMBER
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** Source: [[orthology-aragem]]
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* [[Ec-22_000950]]
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** Source: [[orthology-aragem]]
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** ESILICULOSUS_GENOME
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* Reaction: [[RXN-7716]]
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***EC-NUMBER
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** Source: [[annotation-esiliculosus_genome]]
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== Pathways  ==
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*** Assignment: ec-number
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* [[PWY-7250]], [2Fe-2S] iron-sulfur cluster biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7250 PWY-7250]
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* Reaction: [[RXN-7719]]
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** '''10''' reactions found over '''10''' reactions in the full pathway
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** Source: [[annotation-esiliculosus_genome]]
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== Reconstruction information  ==
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*** Assignment: ec-number
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* Category: [[annotation]]
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* Reaction: [[RXN-8629]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: ec-number
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* Reaction: [[RXN0-1132]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: ec-number
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* Reaction: [[RXN0-1147]]
 
** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
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*** Assignment: automated-name-match
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== Pathways associated ==
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* [[GLYCOLYSIS-TCA-GLYOX-BYPASS]]
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* [[GLYCLEAV-PWY]]
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* [[PYRUVDEHYD-PWY]]
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* [[PWY-7218]]
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* [[PWY-5537]]
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* [[PWY-7384]]
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* [[PWY-5046]]
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* [[PWY-6886]]
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* [[PWY-5084]]
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* [[LYSINE-DEG1-PWY]]
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* [[PWY-7254]]
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* [[PWY-5652]]
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* [[PWY-5690]]
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* [[PWY-5482]]
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* [[PWY66-425]]
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* [[PWY66-398]]
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* [[TCA]]
 
== External links  ==
 
== External links  ==
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: left end position=29817}}
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{{#set: common name=Aminotransferase class V domain}}
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{{#set: transcription direction=POSITIVE}}
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{{#set: common name=Cysteine desulfurase}}
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{{#set: right end position=37551}}
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{{#set: ec number=EC-2.8.1.7}}
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{{#set: centisome position=0.66990376    }}
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{{#set: gene associated=Ec-21_005640|Ec-21_003740|Ec-22_000950}}
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{{#set: common name=Esi_0322_0005|Esi0322_0005|GCSL}}
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{{#set: in pathway=PWY-7250}}
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{{#set: reaction associated=1.8.1.4-RXN|2-KETO-ADIPATE-DEHYDROG-RXN|2OXOGLUTARATEDEH-RXN|2OXOGLUTDECARB-RXN|PYRUVDEH-RXN|RXN-7716|RXN-7719|RXN-8629|RXN0-1132|RXN0-1147}}
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{{#set: reconstruction category=annotation}}
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{{#set: pathway associated=GLYCOLYSIS-TCA-GLYOX-BYPASS|GLYCLEAV-PWY|PYRUVDEHYD-PWY|PWY-7218|PWY-5537|PWY-7384|PWY-5046|PWY-6886|PWY-5084|LYSINE-DEG1-PWY|PWY-7254|PWY-5652|PWY-5690|PWY-5482|PWY66-425|PWY66-398|TCA}}
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{{#set: reconstruction source=annotation-esiliculosus_genome}}
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{{#set: reconstruction tool=pathwaytools}}
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Latest revision as of 19:25, 21 March 2018

Gene Ec-25_000020

  • left end position:
    • 29817
  • transcription direction:
    • POSITIVE
  • right end position:
    • 37551
  • centisome position:
    • 0.66990376
  • Synonym(s):
    • Esi_0322_0005
    • Esi0322_0005
    • GCSL

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=Ec-25_000020&oldid=26753"