Difference between revisions of "RXN1F-165"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7282 PWY-7282] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4751 TAX-47...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN1F-165 RXN1F-165] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/...")
 
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[[Category:Pathway]]
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[[Category:Reaction]]
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7282 PWY-7282] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN1F-165 RXN1F-165] ==
* taxonomic range:
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* direction:
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4751 TAX-4751]
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** LEFT-TO-RIGHT
* common name:
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* ec number:
** 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis (yeast)
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** [http://enzyme.expasy.org/EC/1.14.11 EC-1.14.11]
 
* Synonym(s):
 
* Synonym(s):
  
== Reaction(s) found ==
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== Reaction Formula ==
'''5''' reactions found over '''9''' reactions in the full pathway
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* With identifiers:
* [[PNKIN-RXN]]
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** 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[CPD1F-134]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''=>''' 1 [[CPD1F-137]][c] '''+''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[SUC]][c]
** 1 associated gene(s):
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* With common name(s):
*** [[Ec-02_001230]]
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** 1 2-oxoglutarate[c] '''+''' 1 gibberellin A9[c] '''+''' 1 oxygen[c] '''=>''' 1 gibberellin A4[c] '''+''' 1 CO2[c] '''+''' 1 succinate[c]
** 2 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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== Genes associated with this reaction  ==
*** [[orthology-aragem]]
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Genes have been associated with this reaction based on different elements listed below.
* [[PNPOXI-RXN]]
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* Gene: [[Ec-19_002750]]
** 3 associated gene(s):
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** Source: [[orthology-aragem]]
*** [[Ec-09_002030]]
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* Gene: [[Ec-19_002760]]
*** [[Ec-10_006030]]
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** Source: [[orthology-aragem]]
*** [[Ec-01_000340]]
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* Gene: [[Ec-08_003510]]
** 1 reconstruction source(s) associated:
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** Source: [[orthology-aragem]]
*** [[annotation-esiliculosus_genome]]
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== Pathways  ==
* [[PRPPAMIDOTRANS-RXN]]
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* [[PWY-5070]], gibberellin biosynthesis I (non C-3, non C-13 hydroxylation): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5070 PWY-5070]
** 2 associated gene(s):
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** '''3''' reactions found over '''7''' reactions in the full pathway
*** [[Ec-02_005190]]
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== Reconstruction information  ==
*** [[Ec-07_005050]]
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* Category: [[orthology]]
** 2 reconstruction source(s) associated:
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** Source: [[orthology-aragem]]
*** [[annotation-esiliculosus_genome]]
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*** Tool: [[pantograph]]
*** [[orthology-aragem]]
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* [[PYRIDOXKIN-RXN]]
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** 1 associated gene(s):
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*** [[Ec-02_001230]]
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** 2 reconstruction source(s) associated:
+
*** [[annotation-esiliculosus_genome]]
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*** [[orthology-aragem]]
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* [[PYRIMSYN3-RXN]]
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** 1 associated gene(s):
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*** [[Ec-06_006870]]
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** 1 reconstruction source(s) associated:
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*** [[orthology-aragem]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=PYRIDOXINE-4-DEHYDROGENASE-RXN PYRIDOXINE-4-DEHYDROGENASE-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-14506 RXN-14506]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-14507 RXN-14507]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN3O-3797 RXN3O-3797]
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== External links  ==
 
== External links  ==
{{#set: taxonomic range=TAX-4751}}
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* LIGAND-RXN:
{{#set: common name=4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis (yeast)}}
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** [http://www.genome.jp/dbget-bin/www_bget?R06336 R06336]
{{#set: reaction found=5}}
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{{#set: direction=LEFT-TO-RIGHT}}
{{#set: total reaction=9}}
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{{#set: ec number=EC-1.14.11}}
{{#set: completion rate=56.0}}
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{{#set: gene associated=Ec-19_002750|Ec-19_002760|Ec-08_003510}}
 +
{{#set: in pathway=PWY-5070}}
 +
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-aragem}}
 +
{{#set: reconstruction tool=pantograph}}

Latest revision as of 19:26, 21 March 2018

Reaction RXN1F-165

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5070, gibberellin biosynthesis I (non C-3, non C-13 hydroxylation): PWY-5070
    • 3 reactions found over 7 reactions in the full pathway

Reconstruction information

External links