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| | [[Category:Reaction]] | | [[Category:Reaction]] |
| − | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=SUCCCOASYN-RXN SUCCCOASYN-RXN] == | + | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=TransportSeed_MG+2 TransportSeed_MG+2] == |
| | * direction: | | * direction: |
| − | ** REVERSIBLE | + | ** LEFT-TO-RIGHT |
| − | * common name:
| + | |
| − | ** Succinate:CoA ligase (ADP-forming)
| + | |
| − | * ec number:
| + | |
| − | ** [http://enzyme.expasy.org/EC/6.2.1.5 EC-6.2.1.5]
| + | |
| | * Synonym(s): | | * Synonym(s): |
| − | ** Succinate thiokinase
| |
| − | ** succinyl CoA synthesis
| |
| | | | |
| | == Reaction Formula == | | == Reaction Formula == |
| | * With identifiers: | | * With identifiers: |
| − | ** 1 [[ATP]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[SUC]][c] '''<=>''' 1 [[Pi]][c] '''+''' 1 [[ADP]][c] '''+''' 1 [[SUC-COA]][c] | + | ** 1.0 [[MG+2]][e] '''=>''' 1.0 [[MG+2]][c] |
| | * With common name(s): | | * With common name(s): |
| − | ** 1 ATP[c] '''+''' 1 coenzyme A[c] '''+''' 1 succinate[c] '''<=>''' 1 phosphate[c] '''+''' 1 ADP[c] '''+''' 1 succinyl-CoA[c] | + | ** 1.0 Mg2+[e] '''=>''' 1.0 Mg2+[c] |
| | | | |
| | == Genes associated with this reaction == | | == Genes associated with this reaction == |
| − | Genes have been associated with this reaction based on different elements listed below.
| |
| − | * [[Ec-02_001020]]
| |
| − | ** ESILICULOSUS_GENOME
| |
| − | ***EC-NUMBER
| |
| − | ** [[pantograph]]-[[aragem]]
| |
| − | * [[Ec-10_000030]]
| |
| − | ** [[pantograph]]-[[aragem]]
| |
| | == Pathways == | | == Pathways == |
| − | * [[PWY-5913]], partial TCA cycle (obligate autotrophs): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5913 PWY-5913]
| |
| − | ** '''10''' reactions found over '''11''' reactions in the full pathway
| |
| − | * [[P42-PWY]], incomplete reductive TCA cycle: [http://metacyc.org/META/NEW-IMAGE?object=P42-PWY P42-PWY]
| |
| − | ** '''5''' reactions found over '''7''' reactions in the full pathway
| |
| − | * [[PWY-7384]], anaerobic energy metabolism (invertebrates, mitochondrial): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7384 PWY-7384]
| |
| − | ** '''6''' reactions found over '''12''' reactions in the full pathway
| |
| − | * [[PWY-5392]], reductive TCA cycle II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5392 PWY-5392]
| |
| − | ** '''6''' reactions found over '''12''' reactions in the full pathway
| |
| − | * [[P23-PWY]], reductive TCA cycle I: [http://metacyc.org/META/NEW-IMAGE?object=P23-PWY P23-PWY]
| |
| − | ** '''10''' reactions found over '''12''' reactions in the full pathway
| |
| − | * [[PWY-6969]], TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6969 PWY-6969]
| |
| − | ** '''10''' reactions found over '''12''' reactions in the full pathway
| |
| − | * [[PWY-5537]], pyruvate fermentation to acetate V: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5537 PWY-5537]
| |
| − | ** '''2''' reactions found over '''4''' reactions in the full pathway
| |
| − | * [[PWY-6728]], methylaspartate cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6728 PWY-6728]
| |
| − | ** '''11''' reactions found over '''18''' reactions in the full pathway
| |
| − | * [[PWY-5538]], pyruvate fermentation to acetate VI: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5538 PWY-5538]
| |
| − | ** '''2''' reactions found over '''4''' reactions in the full pathway
| |
| − | * [[PWY-5690]], TCA cycle II (plants and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5690 PWY-5690]
| |
| − | ** '''8''' reactions found over '''9''' reactions in the full pathway
| |
| − | * [[PWY66-398]], TCA cycle III (animals): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-398 PWY66-398]
| |
| − | ** '''10''' reactions found over '''11''' reactions in the full pathway
| |
| − | * [[TCA]], TCA cycle I (prokaryotic): [http://metacyc.org/META/NEW-IMAGE?object=TCA TCA]
| |
| − | ** '''9''' reactions found over '''10''' reactions in the full pathway
| |
| | == Reconstruction information == | | == Reconstruction information == |
| − | * [[orthology]]: | + | * Category: [[manual]] |
| − | ** [[pantograph]]: | + | ** Source: [[manual-import_from_medium]] |
| − | *** [[aragem]]
| + | *** Comment: [[added to manage seeds from extracellular to cytosol compartment]] |
| − | * [[annotation]]: | + | |
| − | ** [[pathwaytools]]: | + | |
| − | *** [[esiliculosus_genome]]
| + | |
| | == External links == | | == External links == |
| − | * RHEA:
| + | {{#set: direction=LEFT-TO-RIGHT}} |
| − | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17661 17661]
| + | {{#set: in pathway=}} |
| − | * LIGAND-RXN:
| + | {{#set: reconstruction category=manual}} |
| − | ** [http://www.genome.jp/dbget-bin/www_bget?R00405 R00405]
| + | {{#set: reconstruction source=manual-import_from_medium}} |
| − | * UNIPROT:
| + | {{#set: reconstruction comment=added to manage seeds from extracellular to cytosol compartment}} |
| − | ** [http://www.uniprot.org/uniprot/O28098 O28098]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P53594 P53594]
| + | |
| − | ** [http://www.uniprot.org/uniprot/O28733 O28733]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P45101 P45101]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P45102 P45102]
| + | |
| − | ** [http://www.uniprot.org/uniprot/Q9JUT0 Q9JUT0]
| + | |
| − | ** [http://www.uniprot.org/uniprot/Q58643 Q58643]
| + | |
| − | ** [http://www.uniprot.org/uniprot/O26663 O26663]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P80886 P80886]
| + | |
| − | ** [http://www.uniprot.org/uniprot/Q9PHY1 Q9PHY1]
| + | |
| − | ** [http://www.uniprot.org/uniprot/Q9JUS9 Q9JUS9]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P80865 P80865]
| + | |
| − | ** [http://www.uniprot.org/uniprot/Q9PHY0 Q9PHY0]
| + | |
| − | ** [http://www.uniprot.org/uniprot/O67729 O67729]
| + | |
| − | ** [http://www.uniprot.org/uniprot/O67546 O67546]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P53593 P53593]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P0AGE9 P0AGE9]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P0A836 P0A836]
| + | |
| − | ** [http://www.uniprot.org/uniprot/O82662 O82662]
| + | |
| − | {{#set: direction=REVERSIBLE}} | + | |
| − | {{#set: common name=Succinate:CoA ligase (ADP-forming)}}
| + | |
| − | {{#set: ec number=EC-6.2.1.5}}
| + | |
| − | {{#set: common name=Succinate thiokinase|succinyl CoA synthesis}}
| + | |
| − | {{#set: gene associated=Ec-02_001020|Ec-10_000030}}
| + | |
| − | {{#set: in pathway=PWY-5913|P42-PWY|PWY-7384|PWY-5392|P23-PWY|PWY-6969|PWY-5537|PWY-6728|PWY-5538|PWY-5690|PWY66-398|TCA}} | + | |
| − | {{#set: reconstruction category=orthology}} | + | |
| − | {{#set: reconstruction tool=pantograph}}
| + | |
| − | {{#set: reconstruction source=aragem}} | + | |
| − | {{#set: reconstruction category=annotation}} | + | |
| − | {{#set: reconstruction tool=pathwaytools}}
| + | |
| − | {{#set: reconstruction source=esiliculosus_genome}}
| + | |
