Difference between revisions of "3.1.26.5-RXN"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5083 PWY-5083] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4751 TAX-47...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.1.26.5-RXN 3.1.26.5-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** Ribonuclease P, Rpp40...")
 
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5083 PWY-5083] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.1.26.5-RXN 3.1.26.5-RXN] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4751 TAX-4751]
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-33090]
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* common name:
 
* common name:
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** NAD/NADH phosphorylation and dephosphorylation
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** Ribonuclease P, Rpp40
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** ribonuclease P
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** RNAse P, Rpr2/Rpp21 subunit
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* ec number:
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** [http://enzyme.expasy.org/EC/3.1.26.5 EC-3.1.26.5]
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''4''' reactions found over '''6''' reactions in the full pathway
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* With identifiers:
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* [[NAD-KIN-RXN]]
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** 1 [[CPD0-2352]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CPD0-2353]][c] '''+''' 1 [[tRNA-fragment]][c]
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** 3 associated gene(s):
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* With common name(s):
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*** [[Ec-18_003910]]
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** 1 a tRNA precursor with a 5' extension and a short 3' extension[c] '''+''' 1 H2O[c] '''=>''' 1 a tRNA precursor with a short 3' extension[c] '''+''' 1 a tRNA fragment[c]
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*** [[Ec-22_000250]]
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*** [[Ec-08_006010]]
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== Genes associated with this reaction  ==
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** 1 reconstruction source(s) associated:
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Genes have been associated with this reaction based on different elements listed below.
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*** [[annotation-esiliculosus_genome]]
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* Gene: [[Ec-03_005340]]
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* [[NADH-DEHYDROG-A-RXN]]
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** Source: [[annotation-esiliculosus_genome]]
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** 15 associated gene(s):
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*** Assignment: AUTOMATED-NAME-MATCH
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*** [[Ec-08_005450]]
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* Gene: [[Ec-01_005810]]
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*** [[Ec-01_008630]]
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** Source: [[annotation-esiliculosus_genome]]
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*** [[Ec-20_001030]]
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*** Assignment: GO-TERM
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*** [[Ec-10_005810]]
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* Gene: [[Ec-22_001370]]
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*** [[Ec-21_001150]]
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** Source: [[annotation-esiliculosus_genome]]
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*** [[Ec-21_004880]]
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*** Assignment: GO-TERM
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*** [[Ec-05_005740]]
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* Gene: [[Ec-04_004570]]
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*** [[Ec-02_006350]]
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** Source: [[annotation-esiliculosus_genome]]
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*** [[Ec-18_003900]]
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*** Assignment: AUTOMATED-NAME-MATCH
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*** [[Ec-03_000900]]
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== Pathways  ==
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*** [[Ec-10_001380]]
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* [[PWY0-1479]], tRNA processing: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1479 PWY0-1479]
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*** [[Ec-01_000420]]
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** '''2''' reactions found over '''10''' reactions in the full pathway
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*** [[Ec-19_001720]]
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== Reconstruction information  ==
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*** [[Ec-21_003400]]
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* Category: [[annotation]]
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*** [[Ec-06_007580]]
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** Source: [[annotation-esiliculosus_genome]]
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** 1 reconstruction source(s) associated:
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*** Tool: [[pathwaytools]]
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*** [[annotation-esiliculosus_genome]]
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−
* [[PYRNUTRANSHYDROGEN-RXN]]
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−
** 2 associated gene(s):
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−
*** [[Ec-01_007000]]
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−
*** [[Ec-21_003320]]
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−
** 1 reconstruction source(s) associated:
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−
*** [[annotation-esiliculosus_genome]]
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−
* [[RXN-5822]]
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−
** 13 associated gene(s):
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−
*** [[Ec-07_000930]]
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−
*** [[Ec-26_006410]]
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−
*** [[Ec-19_002110]]
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*** [[Ec-21_003560]]
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*** [[Ec-19_000870]]
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*** [[Ec-00_000940]]
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*** [[Ec-20_002470]]
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−
*** [[Ec-21_005990]]
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−
*** [[Ec-24_000520]]
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−
*** [[Ec-05_004740]]
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−
*** [[Ec-20_003560]]
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−
*** [[Ec-05_000260]]
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−
*** [[Ec-27_003870]]
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−
** 1 reconstruction source(s) associated:
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−
*** [[annotation-esiliculosus_genome]]
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−
== Reaction(s) not found ==
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−
* [http://metacyc.org/META/NEW-IMAGE?object=NADH-KINASE-RXN NADH-KINASE-RXN]
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−
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-7703 RXN-7703]
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== External links  ==
 
== External links  ==
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* ARACYC:
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* UNIPROT:
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** [http://metacyc.org/ARA/NEW-IMAGE?object=PWY-5083 PWY-5083]
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** [http://www.uniprot.org/uniprot/Q02773 Q02773]
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{{#set: taxonomic range=TAX-4751}}
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** [http://www.uniprot.org/uniprot/P41812 P41812]
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{{#set: taxonomic range=TAX-33090}}
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** [http://www.uniprot.org/uniprot/P0A5X8 P0A5X8]
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{{#set: common name=NAD/NADH phosphorylation and dephosphorylation}}
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** [http://www.uniprot.org/uniprot/P48206 P48206]
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{{#set: reaction found=4}}
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** [http://www.uniprot.org/uniprot/Q9JW46 Q9JW46]
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{{#set: total reaction=6}}
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** [http://www.uniprot.org/uniprot/Q9PNX5 Q9PNX5]
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{{#set: completion rate=67.0}}
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** [http://www.uniprot.org/uniprot/Q9CJ73 Q9CJ73]
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** [http://www.uniprot.org/uniprot/P29433 P29433]
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** [http://www.uniprot.org/uniprot/P25817 P25817]
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** [http://www.uniprot.org/uniprot/P22835 P22835]
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** [http://www.uniprot.org/uniprot/P25814 P25814]
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** [http://www.uniprot.org/uniprot/P0A7Y8 P0A7Y8]
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** [http://www.uniprot.org/uniprot/Q55005 Q55005]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=Ribonuclease P, Rpp40}}
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{{#set: common name=ribonuclease P}}
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{{#set: common name=RNAse P, Rpr2/Rpp21 subunit}}
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{{#set: ec number=EC-3.1.26.5}}
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{{#set: gene associated=Ec-03_005340|Ec-01_005810|Ec-22_001370|Ec-04_004570}}
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{{#set: in pathway=PWY0-1479}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome}}
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{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 19:26, 21 March 2018

Reaction 3.1.26.5-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Ribonuclease P, Rpp40
    • ribonuclease P
    • RNAse P, Rpr2/Rpp21 subunit
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 a tRNA precursor with a 5' extension and a short 3' extension[c] + 1 H2O[c] => 1 a tRNA precursor with a short 3' extension[c] + 1 a tRNA fragment[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY0-1479, tRNA processing: PWY0-1479
    • 2 reactions found over 10 reactions in the full pathway

Reconstruction information

External links






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