Difference between revisions of "RXN-37"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9655 RXN-9655] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/2....")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-37 RXN-37] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/1.2.1....")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9655 RXN-9655] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-37 RXN-37] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.3.1.86 EC-2.3.1.86]
+
** [http://enzyme.expasy.org/EC/1.2.1.3 EC-1.2.1.3]
−
** [http://enzyme.expasy.org/EC/2.3.1.85 EC-2.3.1.85]
+
−
** [http://enzyme.expasy.org/EC/4.2.1.59 EC-4.2.1.59]
+
 
* Synonym(s):
 
* Synonym(s):
−
** (3R)-3-hydroxydecanoyl-[acyl-carrier-protein] hydro-lyase
 
−
** β-hydroxyacyl-ACP dehydrase
 
−
** HDDase
 
−
** β-hydroxyacyl-acyl carrier protein dehydratase
 
−
** FabA
 
−
** β-hydroxydecanoyl thiol ester dehydrase
 
−
** β-hydroxydecanoate dehydrase
 
−
** D-3-hydroxydecanoyl-[acyl-carrier protein] dehydratase
 
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[Beta-hydroxydecanoyl-ACPs]][c] '''=>''' 1 [[WATER]][c] '''+''' 1 [[Trans-D2-decenoyl-ACPs]][c]
+
** 1 [[NAD]][c] '''+''' 1 [[WATER]][c] '''+''' 1 [[CPD-30]][c] '''=>''' 2 [[PROTON]][c] '''+''' 1 [[CPD-35]][c] '''+''' 1 [[NADH]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 a (3R)-3-hydroxydecanoyl-[acp][c] '''=>''' 1 H2O[c] '''+''' 1 a (2E)-dec-2-enoyl-[acp][c]
+
** 1 NAD+[c] '''+''' 1 H2O[c] '''+''' 1 4-acetamidobutanal[c] '''=>''' 2 H+[c] '''+''' 1 4-acetamidobutanoate[c] '''+''' 1 NADH[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[Ec-11_002450]]
 +
** Source: [[orthology-aragem]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-5971]], palmitate biosynthesis II (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5971 PWY-5971]
+
* [[PWY-0]], putrescine degradation III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-0 PWY-0]
−
** '''28''' reactions found over '''31''' reactions in the full pathway
+
** '''1''' reactions found over '''4''' reactions in the full pathway
−
* [[PWY-5994]], palmitate biosynthesis I (animals and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5994 PWY-5994]
+
−
** '''20''' reactions found over '''31''' reactions in the full pathway
+
−
* [[PWY0-862]], (5Z)-dodec-5-enoate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-862 PWY0-862]
+
−
** '''6''' reactions found over '''6''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[gap-filling]]:
+
* Category: [[orthology]]
−
** [[meneco]]:
+
** Source: [[orthology-aragem]]
−
*** [[added for gapfilling]]
+
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=31231 31231]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R05050 R05050]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: ec number=EC-2.3.1.86}}
+
{{#set: ec number=EC-1.2.1.3}}
−
{{#set: ec number=EC-2.3.1.85}}
+
{{#set: gene associated=Ec-11_002450}}
−
{{#set: ec number=EC-4.2.1.59}}
+
{{#set: in pathway=PWY-0}}
−
{{#set: common name=(3R)-3-hydroxydecanoyl-[acyl-carrier-protein] hydro-lyase|β-hydroxyacyl-ACP dehydrase|HDDase|β-hydroxyacyl-acyl carrier protein dehydratase|FabA|β-hydroxydecanoyl thiol ester dehydrase|β-hydroxydecanoate dehydrase|D-3-hydroxydecanoyl-[acyl-carrier protein] dehydratase}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: in pathway=PWY-5971|PWY-5994|PWY0-862}}
+
{{#set: reconstruction source=orthology-aragem}}
−
{{#set: reconstruction category=gap-filling}}
+
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction tool=meneco}}
+
−
{{#set: reconstruction source=added for gapfilling}}
+

Latest revision as of 19:27, 21 March 2018

Reaction RXN-37

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 NAD+[c] + 1 H2O[c] + 1 4-acetamidobutanal[c] => 2 H+[c] + 1 4-acetamidobutanoate[c] + 1 NADH[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-0, putrescine degradation III: PWY-0
    • 1 reactions found over 4 reactions in the full pathway

Reconstruction information

External links




Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=RXN-37&oldid=27064"