Difference between revisions of "PWY-6163"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=TRANSALDOL-RXN TRANSALDOL-RXN] == * direction: ** REVERSIBLE * common name: ** Transaldolase * ec n...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6163 PWY-6163] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-21...")
 
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=TRANSALDOL-RXN TRANSALDOL-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6163 PWY-6163] ==
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* direction:
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* taxonomic range:
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** REVERSIBLE
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-2157]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-3041 TAX-3041]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2763 TAX-2763]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-287987 TAX-287987]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-5204 TAX-5204]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2836 TAX-2836]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4762 TAX-4762]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4890 TAX-4890]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-5794 TAX-5794]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-33090]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
 
* common name:
 
* common name:
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** Transaldolase
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** chorismate biosynthesis from 3-dehydroquinate
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* ec number:
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** [http://enzyme.expasy.org/EC/2.2.1.2 EC-2.2.1.2]
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''6''' reactions found over '''6''' reactions in the full pathway
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** 1 [[D-SEDOHEPTULOSE-7-P]][c] '''+''' 1 [[GAP]][c] '''<=>''' 1 [[FRUCTOSE-6P]][c] '''+''' 1 [[ERYTHROSE-4P]][c]
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* [[2.5.1.19-RXN]]
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* With common name(s):
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** 1 associated gene(s):
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** 1 D-sedoheptulose 7-phosphate[c] '''+''' 1 D-glyceraldehyde 3-phosphate[c] '''<=>''' 1 &beta;-D-fructofuranose 6-phosphate[c] '''+''' 1 D-erythrose 4-phosphate[c]
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*** [[Ec-26_000800]]
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** 2 reconstruction source(s) associated:
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== Genes associated with this reaction  ==
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*** [[annotation-esiliculosus_genome]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[orthology-aragem]]
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* Gene: [[Ec-06_003940]]
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* [[3-DEHYDROQUINATE-DEHYDRATASE-RXN]]
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** Source: [[annotation-esiliculosus_genome]]
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** 4 associated gene(s):
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*** Assignment: AUTOMATED-NAME-MATCH
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*** [[Ec-07_000550]]
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* Gene: [[Ec-01_002780]]
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*** [[Ec-26_004120]]
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** Source: [[orthology-aragem]]
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*** [[Ec-14_005400]]
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** Source: [[orthology-aragem]]
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*** [[Ec-02_006010]]
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== Pathways  ==
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** 2 reconstruction source(s) associated:
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* [[P124-PWY]], Bifidobacterium shunt: [http://metacyc.org/META/NEW-IMAGE?object=P124-PWY P124-PWY]
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*** [[annotation-esiliculosus_genome]]
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** '''12''' reactions found over '''15''' reactions in the full pathway
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*** [[orthology-aragem]]
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* [[P185-PWY]], formaldehyde assimilation III (dihydroxyacetone cycle): [http://metacyc.org/META/NEW-IMAGE?object=P185-PWY P185-PWY]
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* [[CHORISMATE-SYNTHASE-RXN]]
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** '''11''' reactions found over '''12''' reactions in the full pathway
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** 1 associated gene(s):
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* [[PWY-5723]], Rubisco shunt: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5723 PWY-5723]
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*** [[Ec-11_005820]]
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** '''10''' reactions found over '''10''' reactions in the full pathway
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** 2 reconstruction source(s) associated:
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* [[PWY-1861]], formaldehyde assimilation II (RuMP Cycle): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1861 PWY-1861]
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*** [[annotation-esiliculosus_genome]]
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** '''7''' reactions found over '''9''' reactions in the full pathway
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*** [[orthology-aragem]]
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* [[NONOXIPENT-PWY]], pentose phosphate pathway (non-oxidative branch): [http://metacyc.org/META/NEW-IMAGE?object=NONOXIPENT-PWY NONOXIPENT-PWY]
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* [[RXN-7968]]
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** '''5''' reactions found over '''5''' reactions in the full pathway
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** 1 associated gene(s):
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== Reconstruction information  ==
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*** [[Ec-02_006010]]
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* Category: [[orthology]]
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** 1 reconstruction source(s) associated:
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** Source: [[orthology-aragem]]
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*** [[annotation-esiliculosus_genome]]
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*** Tool: [[pantograph]]
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* [[SHIKIMATE-5-DEHYDROGENASE-RXN]]
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* Category: [[annotation]]
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** 1 associated gene(s):
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** Source: [[annotation-esiliculosus_genome]]
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*** [[Ec-02_006010]]
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*** Tool: [[pathwaytools]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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*** [[orthology-aragem]]
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* [[SHIKIMATE-KINASE-RXN]]
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** 2 associated gene(s):
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*** [[Ec-02_005600]]
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*** [[Ec-11_000770]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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*** [[orthology-aragem]]
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== Reaction(s) not found ==
 
== External links  ==
 
== External links  ==
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* RHEA:
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* ECOCYC:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17053 17053]
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** [http://metacyc.org/ECOLI/NEW-IMAGE?object=PWY-6163 PWY-6163]
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* LIGAND-RXN:
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{{#set: taxonomic range=TAX-2157}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01827 R01827]
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{{#set: taxonomic range=TAX-3041}}
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* UNIPROT:
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{{#set: taxonomic range=TAX-2763}}
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** [http://www.uniprot.org/uniprot/P17441 P17441]
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{{#set: taxonomic range=TAX-287987}}
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** [http://www.uniprot.org/uniprot/P17440 P17440]
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{{#set: taxonomic range=TAX-5204}}
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** [http://www.uniprot.org/uniprot/P37837 P37837]
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{{#set: taxonomic range=TAX-2836}}
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** [http://www.uniprot.org/uniprot/P45055 P45055]
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{{#set: taxonomic range=TAX-4762}}
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** [http://www.uniprot.org/uniprot/Q9JSU1 Q9JSU1]
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{{#set: taxonomic range=TAX-4890}}
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** [http://www.uniprot.org/uniprot/P0A867 P0A867]
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{{#set: taxonomic range=TAX-5794}}
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** [http://www.uniprot.org/uniprot/Q9PIL5 Q9PIL5]
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{{#set: taxonomic range=TAX-33090}}
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** [http://www.uniprot.org/uniprot/Q58370 Q58370]
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{{#set: taxonomic range=TAX-2}}
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** [http://www.uniprot.org/uniprot/P34214 P34214]
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{{#set: common name=chorismate biosynthesis from 3-dehydroquinate}}
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** [http://www.uniprot.org/uniprot/P0A870 P0A870]
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{{#set: reaction found=6}}
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** [http://www.uniprot.org/uniprot/P15019 P15019]
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{{#set: total reaction=6}}
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** [http://www.uniprot.org/uniprot/P53228 P53228]
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{{#set: completion rate=100.0}}
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** [http://www.uniprot.org/uniprot/P51778 P51778]
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** [http://www.uniprot.org/uniprot/P72797 P72797]
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** [http://www.uniprot.org/uniprot/O04894 O04894]
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** [http://www.uniprot.org/uniprot/P78865 P78865]
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{{#set: direction=REVERSIBLE}}
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{{#set: common name=Transaldolase}}
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{{#set: ec number=EC-2.2.1.2}}
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{{#set: gene associated=Ec-06_003940|Ec-01_002780}}
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{{#set: in pathway=P124-PWY|P185-PWY|PWY-5723|PWY-1861|NONOXIPENT-PWY}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 20:27, 21 March 2018

Pathway PWY-6163

Reaction(s) found

6 reactions found over 6 reactions in the full pathway

Reaction(s) not found

External links








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