Difference between revisions of "Ec-17 001590"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN1F-161 RXN1F-161] == * direction: ** LEFT-TO-RIGHT * common name: ** GA12-aldehyde monooxygenase...")
(Created page with "Category:Gene == Gene Ec-17_001590 == * left end position: ** 1677514 * transcription direction: ** POSITIVE * right end position: ** 1682647 * centisome position: ** 34.9...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN1F-161 RXN1F-161] ==
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== Gene Ec-17_001590 ==
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* direction:
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* left end position:
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** LEFT-TO-RIGHT
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** 1677514
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* common name:
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* transcription direction:
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** GA12-aldehyde monooxygenase
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** POSITIVE
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* right end position:
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** 1682647
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* centisome position:
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** 34.963165   
 
* Synonym(s):
 
* Synonym(s):
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** Esi_0149_0059
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** Esi0149_0059
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[RXN0-5217]]
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** 1 [[NADPH]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[CPD1F-138]][c] '''=>''' 1 [[CPD1F-95]][c] '''+''' 1 [[NADP]][c] '''+''' 1 [[WATER]][c]
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** Source: [[orthology-aragem]]
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* With common name(s):
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* Reaction: [[SPERMIDINESYN-RXN]]
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** 1 NADPH[c] '''+''' 1 oxygen[c] '''+''' 1 gibberellin A12-aldehyde[c] '''=>''' 1 gibberellin A12[c] '''+''' 1 NADP+[c] '''+''' 1 H2O[c]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: go-term
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Ec-10_006240]]
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** [[pantograph]]-[[aragem]]
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* [[Ec-00_005820]]
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** [[pantograph]]-[[aragem]]
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* [[Ec-00_005850]]
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** [[pantograph]]-[[aragem]]
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== Pathways  ==
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* [[PWY-5047]], gibberellin biosynthesis IV (Gibberella fujikuroi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5047 PWY-5047]
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** '''3''' reactions found over '''15''' reactions in the full pathway
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* [[PWY-5034]], GA12 biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5034 PWY-5034]
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** '''3''' reactions found over '''6''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-aragem]]
 
** Source: [[orthology-aragem]]
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*** Tool: [[pantograph]]
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* Reaction: [[SPERMINE-SYNTHASE-RXN]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: go-term
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== Pathways associated ==
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* [[ARGSPECAT-PWY]]
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* [[POLYAMINSYN3-PWY]]
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* [[BSUBPOLYAMSYN-PWY]]
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* [[PWY0-1303]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: left end position=1677514}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22700 22700]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: right end position=1682647}}
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** [http://www.genome.jp/dbget-bin/www_bget?R06297 R06297]
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{{#set: centisome position=34.963165    }}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=Esi_0149_0059|Esi0149_0059}}
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{{#set: common name=GA12-aldehyde monooxygenase}}
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{{#set: reaction associated=RXN0-5217|SPERMIDINESYN-RXN|SPERMINE-SYNTHASE-RXN}}
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{{#set: gene associated=Ec-10_006240|Ec-00_005820|Ec-00_005850}}
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{{#set: pathway associated=ARGSPECAT-PWY|POLYAMINSYN3-PWY|BSUBPOLYAMSYN-PWY|PWY0-1303}}
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{{#set: in pathway=PWY-5047|PWY-5034}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction source=orthology-aragem}}
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{{#set: reconstruction tool=pantograph}}
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Latest revision as of 19:29, 21 March 2018

Gene Ec-17_001590

  • left end position:
    • 1677514
  • transcription direction:
    • POSITIVE
  • right end position:
    • 1682647
  • centisome position:
    • 34.963165
  • Synonym(s):
    • Esi_0149_0059
    • Esi0149_0059

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=Ec-17_001590&oldid=27233"