Difference between revisions of "Ec-21 005020"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3-ISOPROPYLMALISOM-RXN 3-ISOPROPYLMALISOM-RXN] == * direction: ** REVERSIBLE * common name: ** 3-is...")
(Created page with "Category:Gene == Gene Ec-21_005020 == * left end position: ** 5968402 * transcription direction: ** POSITIVE * right end position: ** 5972285 * centisome position: ** 80.8...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3-ISOPROPYLMALISOM-RXN 3-ISOPROPYLMALISOM-RXN] ==
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== Gene Ec-21_005020 ==
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* direction:
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* left end position:
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** REVERSIBLE
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** 5968402
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* common name:
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* transcription direction:
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** 3-isopropylmalate dehydratase
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** POSITIVE
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** Aconitase/3-isopropylmalate dehydratase, swivel
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* right end position:
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** 5972285
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* centisome position:
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** 80.87135   
 
* Synonym(s):
 
* Synonym(s):
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** (2R,3S)-3-isopropylmalate hydro-lyase
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** Esi_0155_0039
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** β-isopropylmalate dehydratase
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** Esi0155_0039
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** α-isopropylmalate isomerase
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** COX6b
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** 3-isopropylmalate hydro-lyase
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[CYTOCHROME-C-OXIDASE-RXN]]
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** 1 [[3-CARBOXY-3-HYDROXY-ISOCAPROATE]][c] '''<=>''' 1 [[CPD-9451]][c] '''+''' 1 [[WATER]][c]
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** Source: [[annotation-esiliculosus_genome]]
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* With common name(s):
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*** Assignment: go-term
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** 1 (2S)-2-isopropylmalate[c] '''<=>''' 1 2-isopropylmaleate[c] '''+''' 1 H2O[c]
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* Reaction: [[RXN-15830]]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Ec-sdr_f_000030]]
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** [[pantograph]]-[[aragem]]
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* [[Ec-13_001950]]
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** [[pantograph]]-[[aragem]]
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* [[Ec-12_000170]]
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** ESILICULOSUS_GENOME
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***EC-NUMBER
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** [[pantograph]]-[[aragem]]
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== Pathways  ==
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* [[LEUSYN-PWY]], L-leucine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=LEUSYN-PWY LEUSYN-PWY]
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** '''6''' reactions found over '''6''' reactions in the full pathway
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* [[PWY-6871]], 3-methylbutanol biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6871 PWY-6871]
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** '''5''' reactions found over '''7''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-aragem]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
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*** Assignment: go-term
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== Pathways associated ==
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* [[PWY-6692]]
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* [[PWY-7279]]
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* [[PWY-3781]]
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* [[PWY-4521]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: left end position=5968402}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16293 16293]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: right end position=5972285}}
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** [http://www.genome.jp/dbget-bin/www_bget?R03968 R03968]
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{{#set: centisome position=80.87135    }}
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* UNIPROT:
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{{#set: common name=Esi_0155_0039|Esi0155_0039|COX6b}}
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** [http://www.uniprot.org/uniprot/Q9PLW1 Q9PLW1]
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{{#set: reaction associated=CYTOCHROME-C-OXIDASE-RXN|RXN-15830}}
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** [http://www.uniprot.org/uniprot/Q9JU82 Q9JU82]
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{{#set: pathway associated=PWY-6692|PWY-7279|PWY-3781|PWY-4521}}
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** [http://www.uniprot.org/uniprot/P80858 P80858]
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** [http://www.uniprot.org/uniprot/Q9UZ07 Q9UZ07]
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** [http://www.uniprot.org/uniprot/Q9JU81 Q9JU81]
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** [http://www.uniprot.org/uniprot/Q58673 Q58673]
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** [http://www.uniprot.org/uniprot/Q02144 Q02144]
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** [http://www.uniprot.org/uniprot/P44968 P44968]
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** [http://www.uniprot.org/uniprot/Q58667 Q58667]
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** [http://www.uniprot.org/uniprot/P44438 P44438]
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** [http://www.uniprot.org/uniprot/P0A6A6 P0A6A6]
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** [http://www.uniprot.org/uniprot/Q9PLW2 Q9PLW2]
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** [http://www.uniprot.org/uniprot/Q44022 Q44022]
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** [http://www.uniprot.org/uniprot/Q44023 Q44023]
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** [http://www.uniprot.org/uniprot/Q44427 Q44427]
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** [http://www.uniprot.org/uniprot/P17279 P17279]
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** [http://www.uniprot.org/uniprot/P04787 P04787]
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** [http://www.uniprot.org/uniprot/P15717 P15717]
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** [http://www.uniprot.org/uniprot/P18250 P18250]
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** [http://www.uniprot.org/uniprot/Q02142 Q02142]
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** [http://www.uniprot.org/uniprot/P30126 P30126]
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** [http://www.uniprot.org/uniprot/P50181 P50181]
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** [http://www.uniprot.org/uniprot/P07264 P07264]
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** [http://www.uniprot.org/uniprot/P74207 P74207]
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** [http://www.uniprot.org/uniprot/O86534 O86534]
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** [http://www.uniprot.org/uniprot/O86535 O86535]
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{{#set: direction=REVERSIBLE}}
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{{#set: common name=3-isopropylmalate dehydratase}}
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{{#set: common name=Aconitase/3-isopropylmalate dehydratase, swivel}}
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{{#set: common name=(2R,3S)-3-isopropylmalate hydro-lyase|&beta;-isopropylmalate dehydratase|&alpha;-isopropylmalate isomerase|3-isopropylmalate hydro-lyase}}
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{{#set: gene associated=Ec-sdr_f_000030|Ec-13_001950|Ec-12_000170}}
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{{#set: in pathway=LEUSYN-PWY|PWY-6871}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 20:29, 21 March 2018

Gene Ec-21_005020

  • left end position:
    • 5968402
  • transcription direction:
    • POSITIVE
  • right end position:
    • 5972285
  • centisome position:
    • 80.87135
  • Synonym(s):
    • Esi_0155_0039
    • Esi0155_0039
    • COX6b

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=Ec-21_005020&oldid=27244"