Difference between revisions of "RXN-13445"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLYOXIII-RXN GLYOXIII-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** Glyoxalase/Bleomycin...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13445 RXN-13445] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLYOXIII-RXN GLYOXIII-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13445 RXN-13445] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
−
* common name:
 
−
** Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
 
−
** Glyoxalase/fosfomycin resistance/dioxygenase domain
 
−
** glyoxalase domain containing protein
 
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/4.2.1 EC-4.2.1]
+
** [http://enzyme.expasy.org/EC/1.3.1.93 EC-1.3.1.93]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[WATER]][c] '''+''' 1 [[METHYL-GLYOXAL]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[D-LACTATE]][c]
+
** 1 [[CPD-14425]][c] '''+''' 1 [[Donor-H2]][c] '''=>''' 1 [[Acceptor]][c] '''+''' 1 [[CPD-14426]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 H2O[c] '''+''' 1 methylglyoxal[c] '''=>''' 1 H+[c] '''+''' 1 (R)-lactate[c]
+
** 1 (2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA[c] '''+''' 1 an reduced unknown electron acceptor[c] '''=>''' 1 an oxidized unknown electron acceptor[c] '''+''' 1 docosapentaenoyl-CoA[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
−
Genes have been associated with this reaction based on different elements listed below.
 
−
* Gene: [[Ec-24_000860]]
 
−
** Source: [[annotation-esiliculosus_genome]]
 
−
*** Assignment: AUTOMATED-NAME-MATCH
 
−
* Gene: [[Ec-18_000790]]
 
−
** Source: [[annotation-esiliculosus_genome]]
 
−
*** Assignment: AUTOMATED-NAME-MATCH
 
−
* Gene: [[Ec-02_005280]]
 
−
** Source: [[annotation-esiliculosus_genome]]
 
−
*** Assignment: AUTOMATED-NAME-MATCH
 
−
* Gene: [[Ec-11_004780]]
 
−
** Source: [[annotation-esiliculosus_genome]]
 
−
*** Assignment: AUTOMATED-NAME-MATCH
 
−
* Gene: [[Ec-23_003630]]
 
−
** Source: [[annotation-esiliculosus_genome]]
 
−
*** Assignment: AUTOMATED-NAME-MATCH
 
−
* Gene: [[Ec-23_001400]]
 
−
** Source: [[annotation-esiliculosus_genome]]
 
−
*** Assignment: AUTOMATED-NAME-MATCH
 
−
* Gene: [[Ec-14_004210]]
 
−
** Source: [[annotation-esiliculosus_genome]]
 
−
*** Assignment: AUTOMATED-NAME-MATCH
 
−
* Gene: [[Ec-06_008210]]
 
−
** Source: [[annotation-esiliculosus_genome]]
 
−
*** Assignment: AUTOMATED-NAME-MATCH
 
−
* Gene: [[Ec-27_005140]]
 
−
** Source: [[annotation-esiliculosus_genome]]
 
−
*** Assignment: AUTOMATED-NAME-MATCH
 
−
* Gene: [[Ec-01_004500]]
 
−
** Source: [[annotation-esiliculosus_genome]]
 
−
*** Assignment: AUTOMATED-NAME-MATCH
 
−
* Gene: [[Ec-02_005270]]
 
−
** Source: [[annotation-esiliculosus_genome]]
 
−
*** Assignment: AUTOMATED-NAME-MATCH
 
−
* Gene: [[Ec-02_005420]]
 
−
** Source: [[annotation-esiliculosus_genome]]
 
−
*** Assignment: AUTOMATED-NAME-MATCH
 
−
* Gene: [[Ec-19_002580]]
 
−
** Source: [[annotation-esiliculosus_genome]]
 
−
*** Assignment: AUTOMATED-NAME-MATCH
 
−
* Gene: [[Ec-06_002530]]
 
−
** Source: [[annotation-esiliculosus_genome]]
 
−
*** Assignment: AUTOMATED-NAME-MATCH
 
−
* Gene: [[Ec-02_005260]]
 
−
** Source: [[annotation-esiliculosus_genome]]
 
−
*** Assignment: AUTOMATED-NAME-MATCH
 
 
== Pathways  ==
 
== Pathways  ==
 +
* [[PWY-7053]], docosahexaenoate biosynthesis I (lower eukaryotes): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7053 PWY-7053]
 +
** '''5''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-7606]], docosahexaenoate biosynthesis III (6-desaturase, mammals): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7606 PWY-7606]
 +
** '''14''' reactions found over '''14''' reactions in the full pathway
 +
* [[PWY-7727]], docosahexaenoate biosynthesis IV (4-desaturase, mammals): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7727 PWY-7727]
 +
** '''5''' reactions found over '''6''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[annotation]]
 
* Category: [[annotation]]
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*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27754 27754]
 
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase}}
+
{{#set: ec number=EC-1.3.1.93}}
−
{{#set: common name=Glyoxalase/fosfomycin resistance/dioxygenase domain}}
+
{{#set: in pathway=PWY-7053|PWY-7606|PWY-7727}}
−
{{#set: common name=glyoxalase domain containing protein}}
+
−
{{#set: ec number=EC-4.2.1}}
+
−
{{#set: gene associated=Ec-24_000860|Ec-18_000790|Ec-02_005280|Ec-11_004780|Ec-23_003630|Ec-23_001400|Ec-14_004210|Ec-06_008210|Ec-27_005140|Ec-01_004500|Ec-02_005270|Ec-02_005420|Ec-19_002580|Ec-06_002530|Ec-02_005260}}
+
−
{{#set: in pathway=}}
+
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction source=annotation-esiliculosus_genome}}
 
{{#set: reconstruction source=annotation-esiliculosus_genome}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 19:29, 21 March 2018

Reaction RXN-13445

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 (2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA[c] + 1 an reduced unknown electron acceptor[c] => 1 an oxidized unknown electron acceptor[c] + 1 docosapentaenoyl-CoA[c]

Genes associated with this reaction

Pathways

  • PWY-7053, docosahexaenoate biosynthesis I (lower eukaryotes): PWY-7053
    • 5 reactions found over 7 reactions in the full pathway
  • PWY-7606, docosahexaenoate biosynthesis III (6-desaturase, mammals): PWY-7606
    • 14 reactions found over 14 reactions in the full pathway
  • PWY-7727, docosahexaenoate biosynthesis IV (4-desaturase, mammals): PWY-7727
    • 5 reactions found over 6 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=RXN-13445&oldid=27254"