Difference between revisions of "RXN-13445"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=S-ADENMETSYN-RXN S-ADENMETSYN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** S-Adenosyl-Me...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13445 RXN-13445] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=S-ADENMETSYN-RXN S-ADENMETSYN-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13445 RXN-13445] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
−
* common name:
 
−
** S-Adenosyl-Methionine synthetase
 
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.5.1.6 EC-2.5.1.6]
+
** [http://enzyme.expasy.org/EC/1.3.1.93 EC-1.3.1.93]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[ATP]][c] '''+''' 1 [[MET]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[Pi]][c] '''+''' 1 [[S-ADENOSYLMETHIONINE]][c] '''+''' 1 [[PPI]][c]
+
** 1 [[CPD-14425]][c] '''+''' 1 [[Donor-H2]][c] '''=>''' 1 [[Acceptor]][c] '''+''' 1 [[CPD-14426]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 ATP[c] '''+''' 1 L-methionine[c] '''+''' 1 H2O[c] '''=>''' 1 phosphate[c] '''+''' 1 S-adenosyl-L-methionine[c] '''+''' 1 diphosphate[c]
+
** 1 (2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA[c] '''+''' 1 an reduced unknown electron acceptor[c] '''=>''' 1 an oxidized unknown electron acceptor[c] '''+''' 1 docosapentaenoyl-CoA[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
−
Genes have been associated with this reaction based on different elements listed below.
 
−
* [[Ec-06_008470]]
 
−
** ESILICULOSUS_GENOME
 
−
***EC-NUMBER
 
−
** [[pantograph]]-[[aragem]]
 
 
== Pathways  ==
 
== Pathways  ==
−
* [[SAM-PWY]], S-adenosyl-L-methionine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=SAM-PWY SAM-PWY]
+
* [[PWY-7053]], docosahexaenoate biosynthesis I (lower eukaryotes): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7053 PWY-7053]
−
** '''1''' reactions found over '''1''' reactions in the full pathway
+
** '''5''' reactions found over '''7''' reactions in the full pathway
−
* [[PWY-5912]], 2'-deoxymugineic acid phytosiderophore biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5912 PWY-5912]
+
* [[PWY-7606]], docosahexaenoate biosynthesis III (6-desaturase, mammals): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7606 PWY-7606]
−
** '''1''' reactions found over '''4''' reactions in the full pathway
+
** '''14''' reactions found over '''14''' reactions in the full pathway
−
* [[ETHYL-PWY]], ethylene biosynthesis I (plants): [http://metacyc.org/META/NEW-IMAGE?object=ETHYL-PWY ETHYL-PWY]
+
* [[PWY-7727]], docosahexaenoate biosynthesis IV (4-desaturase, mammals): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7727 PWY-7727]
−
** '''2''' reactions found over '''3''' reactions in the full pathway
+
** '''5''' reactions found over '''6''' reactions in the full pathway
−
* [[METHIONINE-DEG1-PWY]], L-methionine degradation I (to L-homocysteine): [http://metacyc.org/META/NEW-IMAGE?object=METHIONINE-DEG1-PWY METHIONINE-DEG1-PWY]
+
−
** '''2''' reactions found over '''3''' reactions in the full pathway
+
−
* [[PWY-5041]], S-adenosyl-L-methionine cycle II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5041 PWY-5041]
+
−
** '''3''' reactions found over '''4''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[annotation]]
−
** [[pantograph]]:
+
** Source: [[annotation-esiliculosus_genome]]
−
*** [[aragem]]
+
*** Tool: [[pathwaytools]]
−
* [[annotation]]:
+
−
** [[pathwaytools]]:
+
−
*** [[esiliculosus_genome]]
+
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21080 21080]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R00177 R00177]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P19358 P19358]
 
−
** [http://www.uniprot.org/uniprot/P18298 P18298]
 
−
** [http://www.uniprot.org/uniprot/Q91X83 Q91X83]
 
−
** [http://www.uniprot.org/uniprot/Q9PNJ8 Q9PNJ8]
 
−
** [http://www.uniprot.org/uniprot/P54419 P54419]
 
−
** [http://www.uniprot.org/uniprot/P56460 P56460]
 
−
** [http://www.uniprot.org/uniprot/Q9JVV6 Q9JVV6]
 
−
** [http://www.uniprot.org/uniprot/Q9CEE0 Q9CEE0]
 
−
** [http://www.uniprot.org/uniprot/O50163 O50163]
 
−
** [http://www.uniprot.org/uniprot/P43762 P43762]
 
−
** [http://www.uniprot.org/uniprot/P23686 P23686]
 
−
** [http://www.uniprot.org/uniprot/P17562 P17562]
 
−
** [http://www.uniprot.org/uniprot/Q7M4Y8 Q7M4Y8]
 
−
** [http://www.uniprot.org/uniprot/Q9S992 Q9S992]
 
−
** [http://www.uniprot.org/uniprot/Q90862 Q90862]
 
−
** [http://www.uniprot.org/uniprot/P13444 P13444]
 
−
** [http://www.uniprot.org/uniprot/P31153 P31153]
 
−
** [http://www.uniprot.org/uniprot/Q00266 Q00266]
 
−
** [http://www.uniprot.org/uniprot/P43281 P43281]
 
−
** [http://www.uniprot.org/uniprot/P40320 P40320]
 
−
** [http://www.uniprot.org/uniprot/P43280 P43280]
 
−
** [http://www.uniprot.org/uniprot/P43282 P43282]
 
−
** [http://www.uniprot.org/uniprot/P48498 P48498]
 
−
** [http://www.uniprot.org/uniprot/P10659 P10659]
 
−
** [http://www.uniprot.org/uniprot/Q39465 Q39465]
 
−
** [http://www.uniprot.org/uniprot/P48466 P48466]
 
−
** [http://www.uniprot.org/uniprot/P49612 P49612]
 
−
** [http://www.uniprot.org/uniprot/P49613 P49613]
 
−
** [http://www.uniprot.org/uniprot/P78003 P78003]
 
−
** [http://www.uniprot.org/uniprot/Q49070 Q49070]
 
−
** [http://www.uniprot.org/uniprot/P0A817 P0A817]
 
−
** [http://www.uniprot.org/uniprot/P50299 P50299]
 
−
** [http://www.uniprot.org/uniprot/O22350 O22350]
 
−
** [http://www.uniprot.org/uniprot/P24260 P24260]
 
−
** [http://www.uniprot.org/uniprot/O60198 O60198]
 
−
** [http://www.uniprot.org/uniprot/Q12642 Q12642]
 
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=S-Adenosyl-Methionine synthetase}}
+
{{#set: ec number=EC-1.3.1.93}}
−
{{#set: ec number=EC-2.5.1.6}}
+
{{#set: in pathway=PWY-7053|PWY-7606|PWY-7727}}
−
{{#set: gene associated=Ec-06_008470}}
+
−
{{#set: in pathway=SAM-PWY|PWY-5912|ETHYL-PWY|METHIONINE-DEG1-PWY|PWY-5041}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=aragem}}
+
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction source=annotation-esiliculosus_genome}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction source=esiliculosus_genome}}
 

Latest revision as of 20:29, 21 March 2018

Reaction RXN-13445

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 (2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA[c] + 1 an reduced unknown electron acceptor[c] => 1 an oxidized unknown electron acceptor[c] + 1 docosapentaenoyl-CoA[c]

Genes associated with this reaction

Pathways

  • PWY-7053, docosahexaenoate biosynthesis I (lower eukaryotes): PWY-7053
    • 5 reactions found over 7 reactions in the full pathway
  • PWY-7606, docosahexaenoate biosynthesis III (6-desaturase, mammals): PWY-7606
    • 14 reactions found over 14 reactions in the full pathway
  • PWY-7727, docosahexaenoate biosynthesis IV (4-desaturase, mammals): PWY-7727
    • 5 reactions found over 6 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=RXN-13445&oldid=27254"