Difference between revisions of "PWY-6443"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXNN-404 RXNN-404] == * direction: ** LEFT-TO-RIGHT * common name: ** Amidase * ec number: ** [http...")
 
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6443 PWY-6443] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-3193 TAX-31...")
 
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXNN-404 RXNN-404] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6443 PWY-6443] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-3193 TAX-3193]
 
* common name:
 
* common name:
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** Amidase
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** benzoate biosynthesis I (CoA-dependent, β-oxidative)
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* ec number:
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** [http://enzyme.expasy.org/EC/3.5.1.4 EC-3.5.1.4]
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* Synonym(s):
 
* Synonym(s):
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** benzoic acid biosynthesis
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''2''' reactions found over '''9''' reactions in the full pathway
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** 1 [[CPD-237]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[INDOLE_ACETATE_AUXIN]][c] '''+''' 1 [[AMMONIUM]][c]
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* [[PWY-6457]]
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* With common name(s):
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** 0 associated gene:
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** 1 indole-3-acetamide[c] '''+''' 1 H2O[c] '''=>''' 1 indole-3-acetate[c] '''+''' 1 ammonium[c]
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* [[RXN-2006]]
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** 1 associated gene(s):
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== Genes associated with this reaction  ==
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*** [[Ec-26_003940]]
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Genes have been associated with this reaction based on different elements listed below.
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** 1 reconstruction source(s) associated:
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* [[Ec-06_009020]]
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*** [[orthology-aragem]]
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** ESILICULOSUS_GENOME
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== Reaction(s) not found ==
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***AUTOMATED-NAME-MATCH
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* [http://metacyc.org/META/NEW-IMAGE?object=BENZOATE--COA-LIGASE-RXN BENZOATE--COA-LIGASE-RXN]
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* [[Ec-02_005910]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11272 RXN-11272]
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** ESILICULOSUS_GENOME
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-2002 RXN-2002]
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***AUTOMATED-NAME-MATCH
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-2003 RXN-2003]
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== Pathways  ==
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-2005 RXN-2005]
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* [[PWY-581]], indole-3-acetate biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-581 PWY-581]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-6724 RXN-6724]
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** '''2''' reactions found over '''14''' reactions in the full pathway
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* [[PWY-5025]], indole-3-acetate biosynthesis IV (bacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5025 PWY-5025]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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* [[PWY-3161]], indole-3-acetate biosynthesis III (bacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-3161 PWY-3161]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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== Reconstruction information  ==
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[esiliculosus_genome]]
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== External links  ==
 
== External links  ==
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* RHEA:
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* PLANTCYC : PWY-6443
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=34371 34371]
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{{#set: taxonomic range=TAX-3193}}
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* LIGAND-RXN:
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{{#set: common name=benzoate biosynthesis I (CoA-dependent, β-oxidative)}}
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** [http://www.genome.jp/dbget-bin/www_bget?R03096 R03096]
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{{#set: common name=benzoic acid biosynthesis}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: reaction found=2}}
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{{#set: common name=Amidase}}
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{{#set: total reaction=9}}
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{{#set: ec number=EC-3.5.1.4}}
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{{#set: completion rate=22.0}}
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{{#set: gene associated=Ec-06_009020|Ec-02_005910}}
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{{#set: in pathway=PWY-581|PWY-5025|PWY-3161}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=esiliculosus_genome}}
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Latest revision as of 20:31, 21 March 2018

Pathway PWY-6443

  • taxonomic range:
  • common name:
    • benzoate biosynthesis I (CoA-dependent, β-oxidative)
  • Synonym(s):
    • benzoic acid biosynthesis

Reaction(s) found

2 reactions found over 9 reactions in the full pathway

Reaction(s) not found

External links

  • PLANTCYC : PWY-6443




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