Difference between revisions of "2.1.1.113-RXN"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5035 PWY-5035] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-58023 TAX-5...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.1.1.113-RXN 2.1.1.113-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** site-specific DNA-m...")
 
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5035 PWY-5035] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.1.1.113-RXN 2.1.1.113-RXN] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-58023 TAX-58023]
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-3195 TAX-3195]
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* common name:
 
* common name:
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** gibberellin biosynthesis III (early C-13 hydroxylation)
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** site-specific DNA-methyltransferase (cytosine-N4-specific)
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* ec number:
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** [http://enzyme.expasy.org/EC/2.1.1.113 EC-2.1.1.113]
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''2''' reactions found over '''7''' reactions in the full pathway
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* With identifiers:
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* [[RXN1F-167]]
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** 1 [[DNA-Cytosines]][c] '''+''' 1 [[S-ADENOSYLMETHIONINE]][c] '''=>''' 1 [[DNA-N4-Methylcytosine]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[ADENOSYL-HOMO-CYS]][c]
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** 3 associated gene(s):
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* With common name(s):
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*** [[Ec-08_003510]]
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** 1 a cytosine in DNA[c] '''+''' 1 S-adenosyl-L-methionine[c] '''=>''' 1 an N4-methylcytosine in DNA[c] '''+''' 1 H+[c] '''+''' 1 S-adenosyl-L-homocysteine[c]
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*** [[Ec-19_002760]]
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*** [[Ec-19_002750]]
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== Genes associated with this reaction  ==
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** 1 reconstruction source(s) associated:
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Genes have been associated with this reaction based on different elements listed below.
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*** [[orthology-aragem]]
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* Gene: [[Ec-04_006290]]
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* [[RXN1F-168]]
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** Source: [[annotation-esiliculosus_genome]]
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** 3 associated gene(s):
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*** Assignment: GO-TERM
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*** [[Ec-19_002750]]
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* Gene: [[Ec-00_002200]]
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*** [[Ec-08_003510]]
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** Source: [[annotation-esiliculosus_genome]]
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*** [[Ec-19_002760]]
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*** Assignment: GO-TERM
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** 1 reconstruction source(s) associated:
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* Gene: [[Ec-09_001730]]
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*** [[orthology-aragem]]
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** Source: [[annotation-esiliculosus_genome]]
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== Reaction(s) not found ==
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*** Assignment: GO-TERM
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-6524 RXN-6524]
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== Pathways  ==
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN1F-101 RXN1F-101]
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== Reconstruction information  ==
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN1F-143 RXN1F-143]
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* Category: [[annotation]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN1F-169 RXN1F-169]
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** Source: [[annotation-esiliculosus_genome]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN1F-170 RXN1F-170]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* ARACYC:
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* LIGAND-RXN:
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** [http://metacyc.org/ARA/NEW-IMAGE?object=PWY-5035 PWY-5035]
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** [http://www.genome.jp/dbget-bin/www_bget?R03003 R03003]
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{{#set: taxonomic range=TAX-58023}}
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* UNIPROT:
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{{#set: taxonomic range=TAX-3195}}
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** [http://www.uniprot.org/uniprot/Q04845 Q04845]
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{{#set: common name=gibberellin biosynthesis III (early C-13 hydroxylation)}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: reaction found=2}}
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{{#set: common name=site-specific DNA-methyltransferase (cytosine-N4-specific)}}
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{{#set: total reaction=7}}
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{{#set: ec number=EC-2.1.1.113}}
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{{#set: completion rate=29.0}}
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{{#set: gene associated=Ec-04_006290|Ec-00_002200|Ec-09_001730}}
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{{#set: in pathway=}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome}}
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{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 19:31, 21 March 2018

Reaction 2.1.1.113-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • site-specific DNA-methyltransferase (cytosine-N4-specific)
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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