Difference between revisions of "RXN-14785"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=IGPSYN-RXN IGPSYN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** Aldolase-type TIM barrel...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14785 RXN-14785] == * direction: ** LEFT-TO-RIGHT * common name: ** acyl-CoA oxidase, partial *...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=IGPSYN-RXN IGPSYN-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14785 RXN-14785] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** Aldolase-type TIM barrel
+
** acyl-CoA oxidase, partial
−
** Indole-3-glycerol phosphate synthase
+
** acyl-CoA oxidase
−
** FIST domain, N-terminal
+
** Acyl-CoA oxidase/dehydrogenase, central domain
−
** indole-3-glycerol-phosphate synthase
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/4.1.1.48 EC-4.1.1.48]
+
** [http://enzyme.expasy.org/EC/1.3.3.6 EC-1.3.3.6]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[CARBOXYPHENYLAMINO-DEOXYRIBULOSE-P]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[WATER]][c] '''+''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[INDOLE-3-GLYCEROL-P]][c]
+
** 1 [[CPD-15651]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''=>''' 1 [[HYDROGEN-PEROXIDE]][c] '''+''' 1 [[CPD-15675]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate[c] '''+''' 1 H+[c] '''=>''' 1 H2O[c] '''+''' 1 CO2[c] '''+''' 1 (1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate[c]
+
** 1 6-trans-tridecenoyl-CoA[c] '''+''' 1 oxygen[c] '''=>''' 1 hydrogen peroxide[c] '''+''' 1 2-trans-6-trans-tridecadienoyl-CoA[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Ec-27_004020]]
+
* Gene: [[Ec-22_002920]]
−
** ESILICULOSUS_GENOME
+
** Source: [[annotation-esiliculosus_genome]]
−
***EC-NUMBER
+
*** Assignment: EC-NUMBER
−
* [[Ec-11_002820]]
+
* Gene: [[Ec-26_004320]]
−
** ESILICULOSUS_GENOME
+
** Source: [[annotation-esiliculosus_genome]]
−
***EC-NUMBER
+
*** Assignment: EC-NUMBER
−
** [[pantograph]]-[[aragem]]
+
* Gene: [[Ec-08_006390]]
−
* [[Ec-08_003030]]
+
** Source: [[annotation-esiliculosus_genome]]
−
** ESILICULOSUS_GENOME
+
*** Assignment: AUTOMATED-NAME-MATCH
−
***EC-NUMBER
+
−
* [[Ec-08_003020]]
+
−
** ESILICULOSUS_GENOME
+
−
***GO-TERM
+
−
* [[Ec-03_003850]]
+
−
** ESILICULOSUS_GENOME
+
−
***EC-NUMBER
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[TRPSYN-PWY]], L-tryptophan biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=TRPSYN-PWY TRPSYN-PWY]
+
* [[PWY-7338]], 10-trans-heptadecenoyl-CoA degradation (reductase-dependent, yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7338 PWY-7338]
−
** '''6''' reactions found over '''6''' reactions in the full pathway
+
** '''3''' reactions found over '''12''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[annotation]]
−
** [[pantograph]]:
+
** Source: [[annotation-esiliculosus_genome]]
−
*** [[aragem]]
+
*** Tool: [[pathwaytools]]
−
* [[annotation]]:
+
−
** [[pathwaytools]]:
+
−
*** [[esiliculosus_genome]]
+
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23476 23476]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R03508 R03508]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P42393 P42393]
 
−
** [http://www.uniprot.org/uniprot/P20577 P20577]
 
−
** [http://www.uniprot.org/uniprot/P18304 P18304]
 
−
** [http://www.uniprot.org/uniprot/Q06121 Q06121]
 
−
** [http://www.uniprot.org/uniprot/Q9V1G3 Q9V1G3]
 
−
** [http://www.uniprot.org/uniprot/P20578 P20578]
 
−
** [http://www.uniprot.org/uniprot/Q9PI11 Q9PI11]
 
−
** [http://www.uniprot.org/uniprot/Q58328 Q58328]
 
−
** [http://www.uniprot.org/uniprot/Q9JSN4 Q9JSN4]
 
−
** [http://www.uniprot.org/uniprot/P03964 P03964]
 
−
** [http://www.uniprot.org/uniprot/P00910 P00910]
 
−
** [http://www.uniprot.org/uniprot/P00909 P00909]
 
−
** [http://www.uniprot.org/uniprot/P00911 P00911]
 
−
** [http://www.uniprot.org/uniprot/P17217 P17217]
 
−
** [http://www.uniprot.org/uniprot/P20409 P20409]
 
−
** [http://www.uniprot.org/uniprot/P00937 P00937]
 
−
** [http://www.uniprot.org/uniprot/P00908 P00908]
 
−
** [http://www.uniprot.org/uniprot/P05328 P05328]
 
−
** [http://www.uniprot.org/uniprot/P06531 P06531]
 
−
** [http://www.uniprot.org/uniprot/P18483 P18483]
 
−
** [http://www.uniprot.org/uniprot/P25170 P25170]
 
−
** [http://www.uniprot.org/uniprot/P26938 P26938]
 
−
** [http://www.uniprot.org/uniprot/P24773 P24773]
 
−
** [http://www.uniprot.org/uniprot/Q01999 Q01999]
 
−
** [http://www.uniprot.org/uniprot/Q9YGB5 Q9YGB5]
 
−
** [http://www.uniprot.org/uniprot/Q9S591 Q9S591]
 
−
** [http://www.uniprot.org/uniprot/Q9X7C7 Q9X7C7]
 
−
** [http://www.uniprot.org/uniprot/Q92370 Q92370]
 
−
** [http://www.uniprot.org/uniprot/Q9ZFA7 Q9ZFA7]
 
−
** [http://www.uniprot.org/uniprot/P94327 P94327]
 
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=Aldolase-type TIM barrel}}
+
{{#set: common name=acyl-CoA oxidase, partial}}
−
{{#set: common name=Indole-3-glycerol phosphate synthase}}
+
{{#set: common name=acyl-CoA oxidase}}
−
{{#set: common name=FIST domain, N-terminal}}
+
{{#set: common name=Acyl-CoA oxidase/dehydrogenase, central domain}}
−
{{#set: common name=indole-3-glycerol-phosphate synthase}}
+
{{#set: ec number=EC-1.3.3.6}}
−
{{#set: ec number=EC-4.1.1.48}}
+
{{#set: gene associated=Ec-22_002920|Ec-26_004320|Ec-08_006390}}
−
{{#set: gene associated=Ec-27_004020|Ec-11_002820|Ec-08_003030|Ec-08_003020|Ec-03_003850}}
+
{{#set: in pathway=PWY-7338}}
−
{{#set: in pathway=TRPSYN-PWY}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=aragem}}
+
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction source=annotation-esiliculosus_genome}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction source=esiliculosus_genome}}
 

Latest revision as of 19:31, 21 March 2018

Reaction RXN-14785

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • acyl-CoA oxidase, partial
    • acyl-CoA oxidase
    • Acyl-CoA oxidase/dehydrogenase, central domain
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7338, 10-trans-heptadecenoyl-CoA degradation (reductase-dependent, yeast): PWY-7338
    • 3 reactions found over 12 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=RXN-14785&oldid=27509"