Difference between revisions of "PWY-5"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DADPKIN-RXN DADPKIN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** nucleoside diphosphate...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5 PWY-5] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-3803 TAX-3803] *...")
 
(One intermediate revision by the same user not shown)
Line 1: Line 1:
[[Category:Reaction]]
+
[[Category:Pathway]]
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DADPKIN-RXN DADPKIN-RXN] ==
+
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5 PWY-5] ==
* direction:
+
* taxonomic range:
** LEFT-TO-RIGHT
+
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-3803 TAX-3803]
 
* common name:
 
* common name:
** nucleoside diphosphate kinase
+
** canavanine biosynthesis
** Nucleoside diphosphate kinase
+
* ec number:
+
** [http://enzyme.expasy.org/EC/2.7.4.6 EC-2.7.4.6]
+
 
* Synonym(s):
 
* Synonym(s):
  
== Reaction Formula ==
+
== Reaction(s) found ==
* With identifiers:
+
'''3''' reactions found over '''4''' reactions in the full pathway
** 1 [[ATP]][c] '''+''' 1 [[DADP]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[DATP]][c]
+
* [[RXN-10]]
* With common name(s):
+
** 1 associated gene(s):
** 1 ATP[c] '''+''' 1 dADP[c] '''=>''' 1 ADP[c] '''+''' 1 dATP[c]
+
*** [[Ec-01_001870]]
 
+
** 1 reconstruction source(s) associated:
== Genes associated with this reaction  ==
+
*** [[annotation-esiliculosus_genome]]
Genes have been associated with this reaction based on different elements listed below.
+
* [[RXN-22]]
* [[Ec-07_000140]]
+
** 1 associated gene(s):
** ESILICULOSUS_GENOME
+
*** [[Ec-12_005890]]
***GO-TERM
+
** 1 reconstruction source(s) associated:
* [[Ec-04_001140]]
+
*** [[annotation-esiliculosus_genome]]
** ESILICULOSUS_GENOME
+
* [[RXN-9]]
***GO-TERM
+
** 1 associated gene(s):
** [[pantograph]]-[[aragem]]
+
*** [[Ec-00_004630]]
* [[Ec-03_001380]]
+
** 1 reconstruction source(s) associated:
** ESILICULOSUS_GENOME
+
*** [[annotation-esiliculosus_genome]]
***GO-TERM
+
== Reaction(s) not found ==
* [[Ec-11_004330]]
+
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-25 RXN-25]
** ESILICULOSUS_GENOME
+
***EC-NUMBER
+
** [[pantograph]]-[[aragem]]
+
* [[Ec-26_003930]]
+
** ESILICULOSUS_GENOME
+
***GO-TERM
+
* [[Ec-22_003280]]
+
** ESILICULOSUS_GENOME
+
***GO-TERM
+
* [[Ec-11_005170]]
+
** ESILICULOSUS_GENOME
+
***GO-TERM
+
== Pathways  ==
+
* [[PWY-7220]], adenosine deoxyribonucleotides de novo biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7220 PWY-7220]
+
** '''4''' reactions found over '''4''' reactions in the full pathway
+
* [[PWY-7224]], purine deoxyribonucleosides salvage: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7224 PWY-7224]
+
** '''2''' reactions found over '''6''' reactions in the full pathway
+
* [[PWY-7227]], adenosine deoxyribonucleotides de novo biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7227 PWY-7227]
+
** '''2''' reactions found over '''2''' reactions in the full pathway
+
== Reconstruction information  ==
+
* Category: [[orthology]]
+
** Source: [[orthology-aragem]]
+
*** Tool: [[pantograph]]
+
* Category: [[annotation]]
+
** Source: [[annotation-esiliculosus_genome]]
+
*** Tool: [[pathwaytools]]
+
 
== External links  ==
 
== External links  ==
* RHEA:
+
{{#set: taxonomic range=TAX-3803}}
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27674 27674]
+
{{#set: common name=canavanine biosynthesis}}
* LIGAND-RXN:
+
{{#set: reaction found=3}}
** [http://www.genome.jp/dbget-bin/www_bget?R01137 R01137]
+
{{#set: total reaction=4}}
{{#set: direction=LEFT-TO-RIGHT}}
+
{{#set: completion rate=75.0}}
{{#set: common name=nucleoside diphosphate kinase}}
+
{{#set: common name=Nucleoside diphosphate kinase}}
+
{{#set: ec number=EC-2.7.4.6}}
+
{{#set: gene associated=Ec-07_000140|Ec-04_001140|Ec-03_001380|Ec-11_004330|Ec-26_003930|Ec-22_003280|Ec-11_005170}}
+
{{#set: in pathway=PWY-7220|PWY-7224|PWY-7227}}
+
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Latest revision as of 19:32, 21 March 2018

Pathway PWY-5

  • taxonomic range:
  • common name:
    • canavanine biosynthesis
  • Synonym(s):

Reaction(s) found

3 reactions found over 4 reactions in the full pathway

Reaction(s) not found

External links