Difference between revisions of "RXN-15468"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DIAMINOPIMDECARB-RXN DIAMINOPIMDECARB-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** PLP-b...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-15468 RXN-15468] == * direction: ** LEFT-TO-RIGHT * Synonym(s): == Reaction Formula == * With...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DIAMINOPIMDECARB-RXN DIAMINOPIMDECARB-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-15468 RXN-15468] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
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* common name:
 
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** PLP-binding barrel
 
−
* ec number:
 
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** [http://enzyme.expasy.org/EC/4.1.1.20 EC-4.1.1.20]
 
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[MESO-DIAMINOPIMELATE]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[LYS]][c]
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** 1 [[E-]][c] '''+''' 1 [[Oxidized-ferredoxins]][e] '''=>''' 1 [[Reduced-ferredoxins]][e]
 
* With common name(s):
 
* With common name(s):
−
** 1 meso-diaminopimelate[c] '''+''' 1 H+[c] '''=>''' 1 CO2[c] '''+''' 1 L-lysine[c]
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**
−
 
+
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
−
Genes have been associated with this reaction based on different elements listed below.
 
−
* [[Ec-01_000060]]
 
−
** ESILICULOSUS_GENOME
 
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***EC-NUMBER
 
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* [[Ec-09_002410]]
 
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** [[pantograph]]-[[aragem]]
 
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* [[Ec-09_002360]]
 
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** [[pantograph]]-[[aragem]]
 
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* [[Ec-09_002420]]
 
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** [[pantograph]]-[[aragem]]
 
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-5097]], L-lysine biosynthesis VI: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5097 PWY-5097]
 
−
** '''7''' reactions found over '''7''' reactions in the full pathway
 
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* [[PWY-2942]], L-lysine biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2942 PWY-2942]
 
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** '''6''' reactions found over '''7''' reactions in the full pathway
 
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* [[DAPLYSINESYN-PWY]], L-lysine biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=DAPLYSINESYN-PWY DAPLYSINESYN-PWY]
 
−
** '''6''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-2941]], L-lysine biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2941 PWY-2941]
 
−
** '''6''' reactions found over '''9''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[orthology]]
 
−
** Source: [[orthology-aragem]]
 
−
*** Tool: [[pantograph]]
 
 
* Category: [[annotation]]
 
* Category: [[annotation]]
 
** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15101 15101]
 
−
* LIGAND-RXN:
 
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** [http://www.genome.jp/dbget-bin/www_bget?R00451 R00451]
 
−
* UNIPROT:
 
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** [http://www.uniprot.org/uniprot/P19572 P19572]
 
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** [http://www.uniprot.org/uniprot/P0A5M4 P0A5M4]
 
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** [http://www.uniprot.org/uniprot/P44316 P44316]
 
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** [http://www.uniprot.org/uniprot/P56129 P56129]
 
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** [http://www.uniprot.org/uniprot/O67262 O67262]
 
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** [http://www.uniprot.org/uniprot/Q9JWA6 Q9JWA6]
 
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** [http://www.uniprot.org/uniprot/Q9CG26 Q9CG26]
 
−
** [http://www.uniprot.org/uniprot/P00861 P00861]
 
−
** [http://www.uniprot.org/uniprot/O27390 O27390]
 
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** [http://www.uniprot.org/uniprot/Q9PII5 Q9PII5]
 
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** [http://www.uniprot.org/uniprot/Q58497 Q58497]
 
−
** [http://www.uniprot.org/uniprot/O29458 O29458]
 
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** [http://www.uniprot.org/uniprot/P41023 P41023]
 
−
** [http://www.uniprot.org/uniprot/P23630 P23630]
 
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** [http://www.uniprot.org/uniprot/P09890 P09890]
 
−
** [http://www.uniprot.org/uniprot/Q55484 Q55484]
 
−
** [http://www.uniprot.org/uniprot/O05321 O05321]
 
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=PLP-binding barrel}}
+
{{#set: in pathway=}}
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{{#set: ec number=EC-4.1.1.20}}
+
{{#set: reconstruction category=annotation}}
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{{#set: gene associated=Ec-01_000060|Ec-09_002410|Ec-09_002360|Ec-09_002420}}
+
{{#set: reconstruction source=annotation-esiliculosus_genome}}
−
{{#set: in pathway=PWY-5097|PWY-2942|DAPLYSINESYN-PWY|PWY-2941}}
+
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction category=orthology|annotation}}
+
−
{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
+
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Latest revision as of 19:32, 21 March 2018

Reaction RXN-15468

  • direction:
    • LEFT-TO-RIGHT
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Pathways

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=RXN-15468&oldid=27648"