Difference between revisions of "PWY-7664"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-2382 RXN0-2382] == * direction: ** LEFT-TO-RIGHT * common name: ** Tryptophan synthase beta su...")
 
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7664 PWY-7664] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2] *...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-2382 RXN0-2382] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7664 PWY-7664] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
 
* common name:
 
* common name:
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** Tryptophan synthase beta subunit-like PLP-dependent enzyme
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** oleate biosynthesis IV (anaerobic)
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** Tryptophan synthase (alpha / beta chains)
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** Tryptophan synthase, beta chain
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* ec number:
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** [http://enzyme.expasy.org/EC/4.2.1.122 EC-4.2.1.122]
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* Synonym(s):
 
* Synonym(s):
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** cis-7-hexadecenoate biosynthesis
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** cis-9-octadecenoate biosynthesis
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** (7Z)-hexadec-7-enoate biosynthesis
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** (9Z)-octadec-9-enoate biosynthesis
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** (7Z)-hexadecenoate biosynthesis
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** (9Z)-octadecenoate biosynthesis
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''10''' reactions found over '''14''' reactions in the full pathway
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** 1 [[SER]][c] '''+''' 1 [[INDOLE]][c] '''=>''' 1 [[WATER]][c] '''+''' 1 [[TRP]][c]
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* [[RXN-16615]]
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* With common name(s):
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** 4 associated gene(s):
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** 1 L-serine[c] '''+''' 1 indole[c] '''=>''' 1 H2O[c] '''+''' 1 L-tryptophan[c]
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*** [[Ec-27_003480]]
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*** [[Ec-27_002090]]
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== Genes associated with this reaction  ==
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*** [[Ec-12_000640]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[Ec-12_000650]]
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* [[Ec-24_004010]]
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** 1 reconstruction source(s) associated:
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** ESILICULOSUS_GENOME
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*** [[annotation-esiliculosus_genome]]
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***AUTOMATED-NAME-MATCH
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* [[RXN-16616]]
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* [[Ec-06_007490]]
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** 1 associated gene(s):
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** ESILICULOSUS_GENOME
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*** [[Ec-01_007100]]
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***AUTOMATED-NAME-MATCH
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** 1 reconstruction source(s) associated:
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* [[Ec-27_001950]]
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*** [[annotation-esiliculosus_genome]]
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** ESILICULOSUS_GENOME
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* [[RXN-16620]]
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***EC-NUMBER
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** 1 associated gene(s):
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* [[Ec-01_012080]]
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*** [[Ec-27_002470]]
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** ESILICULOSUS_GENOME
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** 1 reconstruction source(s) associated:
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***AUTOMATED-NAME-MATCH
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*** [[annotation-esiliculosus_genome]]
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* [[Ec-00_008830]]
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* [[RXN-16621]]
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** ESILICULOSUS_GENOME
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** 4 associated gene(s):
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***AUTOMATED-NAME-MATCH
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*** [[Ec-12_000650]]
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* [[Ec-17_002680]]
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*** [[Ec-12_000640]]
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** ESILICULOSUS_GENOME
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*** [[Ec-27_002090]]
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***AUTOMATED-NAME-MATCH
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*** [[Ec-27_003480]]
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* [[Ec-20_002800]]
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** 1 reconstruction source(s) associated:
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** ESILICULOSUS_GENOME
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*** [[annotation-esiliculosus_genome]]
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***AUTOMATED-NAME-MATCH
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* [[RXN-16622]]
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* [[Ec-24_002360]]
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** 1 associated gene(s):
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** ESILICULOSUS_GENOME
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*** [[Ec-01_007100]]
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***EC-NUMBER
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** 1 reconstruction source(s) associated:
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== Pathways  ==
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*** [[annotation-esiliculosus_genome]]
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* [[TRPSYN-PWY]], L-tryptophan biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=TRPSYN-PWY TRPSYN-PWY]
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* [[RXN-16624]]
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** '''6''' reactions found over '''6''' reactions in the full pathway
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** 1 associated gene(s):
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== Reconstruction information  ==
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*** [[Ec-27_002470]]
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* [[annotation]]:
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** 1 reconstruction source(s) associated:
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** [[pathwaytools]]:
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*** [[annotation-esiliculosus_genome]]
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*** [[esiliculosus_genome]]
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* [[RXN-16625]]
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** 4 associated gene(s):
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*** [[Ec-12_000650]]
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*** [[Ec-12_000640]]
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*** [[Ec-27_003480]]
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*** [[Ec-27_002090]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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* [[RXN-16626]]
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** 1 associated gene(s):
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*** [[Ec-01_007100]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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* [[RXN-16628]]
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** 1 associated gene(s):
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*** [[Ec-27_002470]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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* [[RXN-9533]]
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** 0 associated gene:
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** 1 reconstruction source(s) associated:
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*** [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-16614 RXN-16614]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-16619 RXN-16619]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-16623 RXN-16623]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-16627 RXN-16627]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: taxonomic range=TAX-2}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=26434 26434]
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{{#set: common name=oleate biosynthesis IV (anaerobic)}}
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* LIGAND-RXN:
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{{#set: common name=cis-7-hexadecenoate biosynthesis|cis-9-octadecenoate biosynthesis|(7Z)-hexadec-7-enoate biosynthesis|(9Z)-octadec-9-enoate biosynthesis|(7Z)-hexadecenoate biosynthesis|(9Z)-octadecenoate biosynthesis}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00674 R00674]
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{{#set: reaction found=10}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: total reaction=14}}
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{{#set: common name=Tryptophan synthase beta subunit-like PLP-dependent enzyme}}
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{{#set: completion rate=71.0}}
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{{#set: common name=Tryptophan synthase (alpha / beta chains)}}
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{{#set: common name=Tryptophan synthase, beta chain}}
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{{#set: ec number=EC-4.2.1.122}}
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{{#set: gene associated=Ec-24_004010|Ec-06_007490|Ec-27_001950|Ec-01_012080|Ec-00_008830|Ec-17_002680|Ec-20_002800|Ec-24_002360}}
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{{#set: in pathway=TRPSYN-PWY}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=esiliculosus_genome}}
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Latest revision as of 20:33, 21 March 2018

Pathway PWY-7664

  • taxonomic range:
  • common name:
    • oleate biosynthesis IV (anaerobic)
  • Synonym(s):
    • cis-7-hexadecenoate biosynthesis
    • cis-9-octadecenoate biosynthesis
    • (7Z)-hexadec-7-enoate biosynthesis
    • (9Z)-octadec-9-enoate biosynthesis
    • (7Z)-hexadecenoate biosynthesis
    • (9Z)-octadecenoate biosynthesis

Reaction(s) found

10 reactions found over 14 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=PWY-7664&oldid=27707"