Difference between revisions of "P42-PWY"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.5.1.32-RXN 2.5.1.32-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** Phytoene synthase; ch...")
 
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=P42-PWY P42-PWY] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-224756 TAX-22...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.5.1.32-RXN 2.5.1.32-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=P42-PWY P42-PWY] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-224756 TAX-224756]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-183939 TAX-183939]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-183925 TAX-183925]
 
* common name:
 
* common name:
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** Phytoene synthase; chloroplast precursor
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** incomplete reductive TCA cycle
 
* Synonym(s):
 
* Synonym(s):
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** PSase
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** citric acid cycle variant
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** geranylgeranyl-diphosphate geranylgeranyltransferase
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** tricarboxylic acid cycle variant
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** TCA cycle variation I
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** incomplete reductive tricarboxylic acid cycle
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''5''' reactions found over '''7''' reactions in the full pathway
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** 2 [[GERANYLGERANYL-PP]][c] '''=>''' 1 [[CPD-464]][c] '''+''' 1 [[PPI]][c]
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* [[FUMHYDR-RXN]]
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* With common name(s):
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** 2 associated gene(s):
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** 2 geranylgeranyl diphosphate[c] '''=>''' 1 prephytoene diphosphate[c] '''+''' 1 diphosphate[c]
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*** [[Ec-25_001360]]
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*** [[Ec-23_003460]]
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== Genes associated with this reaction  ==
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** 2 reconstruction source(s) associated:
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Genes have been associated with this reaction based on different elements listed below.
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*** [[annotation-esiliculosus_genome]]
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* [[Ec-04_002810]]
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*** [[orthology-aragem]]
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** ESILICULOSUS_GENOME
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* [[MALATE-DEH-RXN]]
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***EC-NUMBER
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** 2 associated gene(s):
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== Pathways  ==
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*** [[Ec-10_006200]]
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* [[PWY-6287]], neurosporene biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6287 PWY-6287]
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*** [[Ec-02_003100]]
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** '''2''' reactions found over '''5''' reactions in the full pathway
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** 2 reconstruction source(s) associated:
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* [[PWY-6475]], trans-lycopene biosynthesis II (plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6475 PWY-6475]
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*** [[annotation-esiliculosus_genome]]
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** '''4''' reactions found over '''8''' reactions in the full pathway
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*** [[orthology-aragem]]
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== Reconstruction information  ==
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* [[PYRUFLAVREDUCT-RXN]]
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* [[annotation]]:
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** 3 associated gene(s):
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** [[pathwaytools]]:
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*** [[Ec-18_003420]]
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*** [[esiliculosus_genome]]
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*** [[Ec-15_004230]]
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*** [[Ec-23_002710]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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* [[PYRUVATE-CARBOXYLASE-RXN]]
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** 1 associated gene(s):
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*** [[Ec-03_001890]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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* [[SUCCCOASYN-RXN]]
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** 2 associated gene(s):
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*** [[Ec-10_000030]]
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*** [[Ec-02_001020]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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*** [[orthology-aragem]]
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== Reaction(s) not found ==
 +
* [http://metacyc.org/META/NEW-IMAGE?object=2-OXOGLUTARATE-SYNTHASE-RXN 2-OXOGLUTARATE-SYNTHASE-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=R601-RXN R601-RXN]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: taxonomic range=TAX-224756}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22296 22296]
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{{#set: taxonomic range=TAX-183939}}
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* LIGAND-RXN:
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{{#set: taxonomic range=TAX-183925}}
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** [http://www.genome.jp/dbget-bin/www_bget?R02065 R02065]
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{{#set: common name=incomplete reductive TCA cycle}}
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* UNIPROT:
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{{#set: common name=citric acid cycle variant|tricarboxylic acid cycle variant|TCA cycle variation I|incomplete reductive tricarboxylic acid cycle}}
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** [http://www.uniprot.org/uniprot/P53609 P53609]
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{{#set: reaction found=5}}
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** [http://www.uniprot.org/uniprot/P37295 P37295]
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{{#set: total reaction=7}}
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** [http://www.uniprot.org/uniprot/P22872 P22872]
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{{#set: completion rate=71.0}}
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** [http://www.uniprot.org/uniprot/P53610 P53610]
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** [http://www.uniprot.org/uniprot/P53612 P53612]
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** [http://www.uniprot.org/uniprot/P17056 P17056]
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** [http://www.uniprot.org/uniprot/P49293 P49293]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=Phytoene synthase; chloroplast precursor}}
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{{#set: common name=PSase|geranylgeranyl-diphosphate geranylgeranyltransferase}}
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{{#set: gene associated=Ec-04_002810}}
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{{#set: in pathway=PWY-6287|PWY-6475}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=esiliculosus_genome}}
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Latest revision as of 19:33, 21 March 2018

Pathway P42-PWY

  • taxonomic range:
  • common name:
    • incomplete reductive TCA cycle
  • Synonym(s):
    • citric acid cycle variant
    • tricarboxylic acid cycle variant
    • TCA cycle variation I
    • incomplete reductive tricarboxylic acid cycle

Reaction(s) found

5 reactions found over 7 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=P42-PWY&oldid=27767"