Difference between revisions of "RXN-12669"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DNA-CYTOSINE-5--METHYLTRANSFERASE-RXN DNA-CYTOSINE-5--METHYLTRANSFERASE-RXN] == * direction: ** LEF...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12669 RXN-12669] == * direction: ** LEFT-TO-RIGHT * common name: ** acyl-CoA oxidase, partial *...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DNA-CYTOSINE-5--METHYLTRANSFERASE-RXN DNA-CYTOSINE-5--METHYLTRANSFERASE-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12669 RXN-12669] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** tRNA (cytosine-5-)-methyltransferase
+
** acyl-CoA oxidase, partial
 +
** acyl-CoA oxidase
 +
** Acyl-CoA oxidase/dehydrogenase, central domain
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.1.1.37 EC-2.1.1.37]
+
** [http://enzyme.expasy.org/EC/1.3.3.6 EC-1.3.3.6]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[DNA-Cytosines]][c] '''+''' 1 [[S-ADENOSYLMETHIONINE]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[ADENOSYL-HOMO-CYS]][c] '''+''' 1 [[5-Methylcytosine-DNA]][c]
+
** 1 [[CPD-196]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''=>''' 1 [[CPD0-2108]][c] '''+''' 1 [[HYDROGEN-PEROXIDE]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 a cytosine in DNA[c] '''+''' 1 S-adenosyl-L-methionine[c] '''=>''' 1 H+[c] '''+''' 1 S-adenosyl-L-homocysteine[c] '''+''' 1 a DNA 5-methylcytosine[c]
+
** 1 octanoyl-CoA[c] '''+''' 1 oxygen[c] '''=>''' 1 trans-oct-2-enoyl-CoA[c] '''+''' 1 hydrogen peroxide[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Ec-01_012190]]
+
* Gene: [[Ec-26_004320]]
−
** ESILICULOSUS_GENOME
+
** Source: [[annotation-esiliculosus_genome]]
−
***EC-NUMBER
+
*** Assignment: EC-NUMBER
−
** [[pantograph]]-[[aragem]]
+
* Gene: [[Ec-22_002920]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Ec-08_006390]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 
== Pathways  ==
 
== Pathways  ==
 +
* [[PWY-6920]], 6-gingerol analog biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6920 PWY-6920]
 +
** '''3''' reactions found over '''6''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[annotation]]
−
** [[pantograph]]:
+
** Source: [[annotation-esiliculosus_genome]]
−
*** [[aragem]]
+
*** Tool: [[pathwaytools]]
−
* [[annotation]]:
+
−
** [[pathwaytools]]:
+
−
*** [[esiliculosus_genome]]
+
 
== External links  ==
 
== External links  ==
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R00380 R00380]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P24581 P24581]
 
−
** [http://www.uniprot.org/uniprot/P05102 P05102]
 
−
** [http://www.uniprot.org/uniprot/P05101 P05101]
 
−
** [http://www.uniprot.org/uniprot/P06530 P06530]
 
−
** [http://www.uniprot.org/uniprot/O41165 O41165]
 
−
** [http://www.uniprot.org/uniprot/Q98580 Q98580]
 
−
** [http://www.uniprot.org/uniprot/Q98567 Q98567]
 
−
** [http://www.uniprot.org/uniprot/Q59606 Q59606]
 
−
** [http://www.uniprot.org/uniprot/P0A462 P0A462]
 
−
** [http://www.uniprot.org/uniprot/P71101 P71101]
 
−
** [http://www.uniprot.org/uniprot/P50192 P50192]
 
−
** [http://www.uniprot.org/uniprot/P50185 P50185]
 
−
** [http://www.uniprot.org/uniprot/Q38652 Q38652]
 
−
** [http://www.uniprot.org/uniprot/P52311 P52311]
 
−
** [http://www.uniprot.org/uniprot/P31974 P31974]
 
−
** [http://www.uniprot.org/uniprot/P30774 P30774]
 
−
** [http://www.uniprot.org/uniprot/P23941 P23941]
 
−
** [http://www.uniprot.org/uniprot/P25262 P25262]
 
−
** [http://www.uniprot.org/uniprot/P25267 P25267]
 
−
** [http://www.uniprot.org/uniprot/P25263 P25263]
 
−
** [http://www.uniprot.org/uniprot/P15446 P15446]
 
−
** [http://www.uniprot.org/uniprot/P24600 P24600]
 
−
** [http://www.uniprot.org/uniprot/P23737 P23737]
 
−
** [http://www.uniprot.org/uniprot/P13906 P13906]
 
−
** [http://www.uniprot.org/uniprot/P14243 P14243]
 
−
** [http://www.uniprot.org/uniprot/P14244 P14244]
 
−
** [http://www.uniprot.org/uniprot/P14230 P14230]
 
−
** [http://www.uniprot.org/uniprot/P11409 P11409]
 
−
** [http://www.uniprot.org/uniprot/P10283 P10283]
 
−
** [http://www.uniprot.org/uniprot/P25265 P25265]
 
−
** [http://www.uniprot.org/uniprot/P0AED9 P0AED9]
 
−
** [http://www.uniprot.org/uniprot/P20589 P20589]
 
−
** [http://www.uniprot.org/uniprot/Q02778 Q02778]
 
−
** [http://www.uniprot.org/uniprot/P95820 P95820]
 
−
** [http://www.uniprot.org/uniprot/P70750 P70750]
 
−
** [http://www.uniprot.org/uniprot/P25264 P25264]
 
−
** [http://www.uniprot.org/uniprot/Q47257 Q47257]
 
−
** [http://www.uniprot.org/uniprot/O87740 O87740]
 
−
** [http://www.uniprot.org/uniprot/P43420 P43420]
 
−
** [http://www.uniprot.org/uniprot/Q9JWD8 Q9JWD8]
 
−
** [http://www.uniprot.org/uniprot/Q9JU80 Q9JU80]
 
−
** [http://www.uniprot.org/uniprot/P08455 P08455]
 
−
** [http://www.uniprot.org/uniprot/P11408 P11408]
 
−
** [http://www.uniprot.org/uniprot/P17044 P17044]
 
−
** [http://www.uniprot.org/uniprot/P19888 P19888]
 
−
** [http://www.uniprot.org/uniprot/P00476 P00476]
 
−
** [http://www.uniprot.org/uniprot/P09915 P09915]
 
−
** [http://www.uniprot.org/uniprot/P68586 P68586]
 
−
** [http://www.uniprot.org/uniprot/Q9ZLZ0 Q9ZLZ0]
 
−
** [http://www.uniprot.org/uniprot/O24892 O24892]
 
−
** [http://www.uniprot.org/uniprot/P45000 P45000]
 
−
** [http://www.uniprot.org/uniprot/P29567 P29567]
 
−
** [http://www.uniprot.org/uniprot/P25282 P25282]
 
−
** [http://www.uniprot.org/uniprot/Q9JQR8 Q9JQR8]
 
−
** [http://www.uniprot.org/uniprot/O25746 O25746]
 
−
** [http://www.uniprot.org/uniprot/P36216 P36216]
 
−
** [http://www.uniprot.org/uniprot/P25283 P25283]
 
−
** [http://www.uniprot.org/uniprot/O23273 O23273]
 
−
** [http://www.uniprot.org/uniprot/Q92072 Q92072]
 
−
** [http://www.uniprot.org/uniprot/P79922 P79922]
 
−
** [http://www.uniprot.org/uniprot/O08431 O08431]
 
−
** [http://www.uniprot.org/uniprot/Q9Z330 Q9Z330]
 
−
** [http://www.uniprot.org/uniprot/P13864 P13864]
 
−
** [http://www.uniprot.org/uniprot/Q9S9I8 Q9S9I8]
 
−
** [http://www.uniprot.org/uniprot/P34881 P34881]
 
−
** [http://www.uniprot.org/uniprot/Q60171 Q60171]
 
−
** [http://www.uniprot.org/uniprot/O65343 O65343]
 
−
** [http://www.uniprot.org/uniprot/O49022 O49022]
 
−
** [http://www.uniprot.org/uniprot/Q9T0I1 Q9T0I1]
 
−
** [http://www.uniprot.org/uniprot/O49889 O49889]
 
−
** [http://www.uniprot.org/uniprot/O42731 O42731]
 
−
** [http://www.uniprot.org/uniprot/O48866 O48866]
 
−
** [http://www.uniprot.org/uniprot/O48867 O48867]
 
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=tRNA (cytosine-5-)-methyltransferase}}
+
{{#set: common name=acyl-CoA oxidase, partial}}
−
{{#set: ec number=EC-2.1.1.37}}
+
{{#set: common name=acyl-CoA oxidase}}
−
{{#set: gene associated=Ec-01_012190}}
+
{{#set: common name=Acyl-CoA oxidase/dehydrogenase, central domain}}
−
{{#set: in pathway=}}
+
{{#set: ec number=EC-1.3.3.6}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: gene associated=Ec-26_004320|Ec-22_002920|Ec-08_006390}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: in pathway=PWY-6920}}
−
{{#set: reconstruction source=aragem}}
+
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction source=annotation-esiliculosus_genome}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction source=esiliculosus_genome}}
 

Latest revision as of 19:33, 21 March 2018

Reaction RXN-12669

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • acyl-CoA oxidase, partial
    • acyl-CoA oxidase
    • Acyl-CoA oxidase/dehydrogenase, central domain
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6920, 6-gingerol analog biosynthesis (engineered): PWY-6920
    • 3 reactions found over 6 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=RXN-12669&oldid=27786"