Difference between revisions of "GTP-CYCLOHYDRO-II-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8036 RXN-8036] == * direction: ** LEFT-TO-RIGHT * common name: ** Beta-glucosidase, family GH1...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GTP-CYCLOHYDRO-II-RXN GTP-CYCLOHYDRO-II-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** GTP...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8036 RXN-8036] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GTP-CYCLOHYDRO-II-RXN GTP-CYCLOHYDRO-II-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** Beta-glucosidase, family GH1
+
** GTP cyclohydrolase II
−
** Beta-glucosidase, family GH3
+
−
** Beta-glucosidase, family GH30
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/3.2.1.21 EC-3.2.1.21]
+
** [http://enzyme.expasy.org/EC/3.5.4.25 EC-3.5.4.25]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[CPD-7417]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CPD-7418]][c] '''+''' 1 [[Glucopyranose]][c]
+
** 3 [[WATER]][c] '''+''' 1 [[GTP]][c] '''=>''' 1 [[FORMATE]][c] '''+''' 1 [[PPI]][c] '''+''' 2 [[PROTON]][c] '''+''' 1 [[DIAMINO-OH-PHOSPHORIBOSYLAMINO-PYR]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 cis-coumarinic acid-β-D-glucoside[c] '''+''' 1 H2O[c] '''=>''' 1 coumarinate[c] '''+''' 1 D-glucopyranose[c]
+
** 3 H2O[c] '''+''' 1 GTP[c] '''=>''' 1 formate[c] '''+''' 1 diphosphate[c] '''+''' 2 H+[c] '''+''' 1 2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Ec-04_002190]]
+
* Gene: [[Ec-27_004040]]
−
** ESILICULOSUS_GENOME
+
** Source: [[orthology-aragem]]
−
***EC-NUMBER
+
* Gene: [[Ec-02_005710]]
−
* [[Ec-07_005240]]
+
** Source: [[annotation-esiliculosus_genome]]
−
** ESILICULOSUS_GENOME
+
*** Assignment: GO-TERM
−
***EC-NUMBER
+
** Source: [[orthology-aragem]]
−
** [[pantograph]]-[[aragem]]
+
−
* [[Ec-20_004800]]
+
−
** ESILICULOSUS_GENOME
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[aragem]]
+
−
* [[Ec-07_001850]]
+
−
** ESILICULOSUS_GENOME
+
−
***EC-NUMBER
+
−
* [[Ec-26_002410]]
+
−
** ESILICULOSUS_GENOME
+
−
***EC-NUMBER
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-5176]], coumarin biosynthesis (via 2-coumarate): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5176 PWY-5176]
+
* [[PWY-7539]], 6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7539 PWY-7539]
−
** '''2''' reactions found over '''5''' reactions in the full pathway
+
** '''4''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-6168]], flavin biosynthesis III (fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6168 PWY-6168]
 +
** '''6''' reactions found over '''9''' reactions in the full pathway
 +
* [[RIBOSYN2-PWY]], flavin biosynthesis I (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=RIBOSYN2-PWY RIBOSYN2-PWY]
 +
** '''8''' reactions found over '''9''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
Line 47: Line 38:
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=31223 31223]
 
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R04998 R04998]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00425 R00425]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P0A7I7 P0A7I7]
 +
** [http://www.uniprot.org/uniprot/Q9PNU4 Q9PNU4]
 +
** [http://www.uniprot.org/uniprot/O08315 O08315]
 +
** [http://www.uniprot.org/uniprot/O66679 O66679]
 +
** [http://www.uniprot.org/uniprot/Q9PHU4 Q9PHU4]
 +
** [http://www.uniprot.org/uniprot/O25484 O25484]
 +
** [http://www.uniprot.org/uniprot/P0A5V0 P0A5V0]
 +
** [http://www.uniprot.org/uniprot/P0A7I8 P0A7I8]
 +
** [http://www.uniprot.org/uniprot/P43525 P43525]
 +
** [http://www.uniprot.org/uniprot/P17620 P17620]
 +
** [http://www.uniprot.org/uniprot/P38066 P38066]
 +
** [http://www.uniprot.org/uniprot/P50139 P50139]
 +
** [http://www.uniprot.org/uniprot/P74104 P74104]
 +
** [http://www.uniprot.org/uniprot/O24019 O24019]
 +
** [http://www.uniprot.org/uniprot/P51695 P51695]
 +
** [http://www.uniprot.org/uniprot/P50855 P50855]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=Beta-glucosidase, family GH1}}
+
{{#set: common name=GTP cyclohydrolase II}}
−
{{#set: common name=Beta-glucosidase, family GH3}}
+
{{#set: ec number=EC-3.5.4.25}}
−
{{#set: common name=Beta-glucosidase, family GH30}}
+
{{#set: gene associated=Ec-27_004040|Ec-02_005710}}
−
{{#set: ec number=EC-3.2.1.21}}
+
{{#set: in pathway=PWY-7539|PWY-6168|RIBOSYN2-PWY}}
−
{{#set: gene associated=Ec-04_002190|Ec-07_005240|Ec-20_004800|Ec-07_001850|Ec-26_002410}}
+
−
{{#set: in pathway=PWY-5176}}
+
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
 
{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 20:34, 21 March 2018

Reaction GTP-CYCLOHYDRO-II-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • GTP cyclohydrolase II
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7539, 6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia): PWY-7539
    • 4 reactions found over 5 reactions in the full pathway
  • PWY-6168, flavin biosynthesis III (fungi): PWY-6168
    • 6 reactions found over 9 reactions in the full pathway
  • RIBOSYN2-PWY, flavin biosynthesis I (bacteria and plants): RIBOSYN2-PWY
    • 8 reactions found over 9 reactions in the full pathway

Reconstruction information

External links





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