Difference between revisions of "GTP-CYCLOHYDRO-II-RXN"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6498 PWY-6498] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-27...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GTP-CYCLOHYDRO-II-RXN GTP-CYCLOHYDRO-II-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** GTP...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6498 PWY-6498] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GTP-CYCLOHYDRO-II-RXN GTP-CYCLOHYDRO-II-RXN] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-2759]
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
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* common name:
 
* common name:
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** eumelanin biosynthesis
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** GTP cyclohydrolase II
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* ec number:
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** [http://enzyme.expasy.org/EC/3.5.4.25 EC-3.5.4.25]
 
* Synonym(s):
 
* Synonym(s):
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** melanochrome biosynthesis
 
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** melanogenesis
 
  
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== Reaction(s) found ==
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== Reaction Formula ==
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* '''1''' reaction(s) found
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* With identifiers:
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** [[RXN-11403]]
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** 3 [[WATER]][c] '''+''' 1 [[GTP]][c] '''=>''' 1 [[FORMATE]][c] '''+''' 1 [[PPI]][c] '''+''' 2 [[PROTON]][c] '''+''' 1 [[DIAMINO-OH-PHOSPHORIBOSYLAMINO-PYR]][c]
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== Reaction(s) not found ==
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* With common name(s):
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* '''5''' reaction(s) not found
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** 3 H2O[c] '''+''' 1 GTP[c] '''=>''' 1 formate[c] '''+''' 1 diphosphate[c] '''+''' 2 H+[c] '''+''' 1 2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one[c]
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** [http://metacyc.org/META/NEW-IMAGE?object=RXN-11408 RXN-11408]
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** [http://metacyc.org/META/NEW-IMAGE?object=RXN-11444 RXN-11444]
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== Genes associated with this reaction  ==
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** [http://metacyc.org/META/NEW-IMAGE?object=RXN-11404 RXN-11404]
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Genes have been associated with this reaction based on different elements listed below.
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** [http://metacyc.org/META/NEW-IMAGE?object=DOPACHROME-DELTA-ISOMERASE-RXN DOPACHROME-DELTA-ISOMERASE-RXN]
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* Gene: [[Ec-27_004040]]
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** [http://metacyc.org/META/NEW-IMAGE?object=RXN-11406 RXN-11406]
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** Source: [[orthology-aragem]]
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* Gene: [[Ec-02_005710]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: GO-TERM
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** Source: [[orthology-aragem]]
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== Pathways  ==
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* [[PWY-7539]], 6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7539 PWY-7539]
 +
** '''4''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-6168]], flavin biosynthesis III (fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6168 PWY-6168]
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** '''6''' reactions found over '''9''' reactions in the full pathway
 +
* [[RIBOSYN2-PWY]], flavin biosynthesis I (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=RIBOSYN2-PWY RIBOSYN2-PWY]
 +
** '''8''' reactions found over '''9''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
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** Source: [[orthology-aragem]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: taxonomic range=TAX-2759}}
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* LIGAND-RXN:
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{{#set: taxonomic range=TAX-2}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00425 R00425]
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{{#set: common name=eumelanin biosynthesis}}
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* UNIPROT:
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{{#set: common name=melanochrome biosynthesis|melanogenesis}}
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** [http://www.uniprot.org/uniprot/P0A7I7 P0A7I7]
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{{#set: reaction found=1}}
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** [http://www.uniprot.org/uniprot/Q9PNU4 Q9PNU4]
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{{#set: reaction not found=5}}
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** [http://www.uniprot.org/uniprot/O08315 O08315]
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** [http://www.uniprot.org/uniprot/O66679 O66679]
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** [http://www.uniprot.org/uniprot/Q9PHU4 Q9PHU4]
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** [http://www.uniprot.org/uniprot/O25484 O25484]
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** [http://www.uniprot.org/uniprot/P0A5V0 P0A5V0]
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** [http://www.uniprot.org/uniprot/P0A7I8 P0A7I8]
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** [http://www.uniprot.org/uniprot/P43525 P43525]
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** [http://www.uniprot.org/uniprot/P17620 P17620]
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** [http://www.uniprot.org/uniprot/P38066 P38066]
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** [http://www.uniprot.org/uniprot/P50139 P50139]
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** [http://www.uniprot.org/uniprot/P74104 P74104]
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** [http://www.uniprot.org/uniprot/O24019 O24019]
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** [http://www.uniprot.org/uniprot/P51695 P51695]
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** [http://www.uniprot.org/uniprot/P50855 P50855]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=GTP cyclohydrolase II}}
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{{#set: ec number=EC-3.5.4.25}}
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{{#set: gene associated=Ec-27_004040|Ec-02_005710}}
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{{#set: in pathway=PWY-7539|PWY-6168|RIBOSYN2-PWY}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 19:34, 21 March 2018

Reaction GTP-CYCLOHYDRO-II-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • GTP cyclohydrolase II
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7539, 6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia): PWY-7539
    • 4 reactions found over 5 reactions in the full pathway
  • PWY-6168, flavin biosynthesis III (fungi): PWY-6168
    • 6 reactions found over 9 reactions in the full pathway
  • RIBOSYN2-PWY, flavin biosynthesis I (bacteria and plants): RIBOSYN2-PWY
    • 8 reactions found over 9 reactions in the full pathway

Reconstruction information

External links





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