Difference between revisions of "XYLULOSE-5-PHOSPHATE"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=SUCCINATE-DEHYDROGENASE-UBIQUINONE-RXN SUCCINATE-DEHYDROGENASE-UBIQUINONE-RXN] == * direction: ** L...")
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=XYLULOSE-5-PHOSPHATE XYLULOSE-5-PHOSPHATE] == * smiles: ** C(OP([O-])(=O)[O-])C(O)C(O)C(=O)CO *...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
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[[Category:Metabolite]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=SUCCINATE-DEHYDROGENASE-UBIQUINONE-RXN SUCCINATE-DEHYDROGENASE-UBIQUINONE-RXN] ==
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=XYLULOSE-5-PHOSPHATE XYLULOSE-5-PHOSPHATE] ==
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* direction:
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* smiles:
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** LEFT-TO-RIGHT
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** C(OP([O-])(=O)[O-])C(O)C(O)C(=O)CO
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* inchi key:
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** InChIKey=FNZLKVNUWIIPSJ-RFZPGFLSSA-L
 
* common name:
 
* common name:
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** Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
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** D-xylulose 5-phosphate
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** SDH1, succinate dehydrogenase subunit 1
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* molecular weight:
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** SDH3, succinate dehydrogenase subunit 3
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** 228.095   
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** SDH2, succinate dehydrogenase subunit 2
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** SDH4, succinate dehydrogenase subunit 4
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* ec number:
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** [http://enzyme.expasy.org/EC/1.3.5.1 EC-1.3.5.1]
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* Synonym(s):
 
* Synonym(s):
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** xylulose 5-phosphate
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** xylulose-phosphate
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** D-xylulose-5-P
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** xylulose-P
  
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== Reaction Formula ==
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== Reaction(s) known to consume the compound ==
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* With identifiers:
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== Reaction(s) known to produce the compound ==
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** 1 [[SUC]][c] '''+''' 1 [[Ubiquinones]][c] '''=>''' 1 [[Ubiquinols]][c] '''+''' 1 [[FUM]][c]
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* [[XYLULOKIN-RXN]]
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* With common name(s):
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== Reaction(s) of unknown directionality ==
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** 1 succinate[c] '''+''' 1 a ubiquinone[c] '''=>''' 1 an ubiquinol[c] '''+''' 1 fumarate[c]
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* [[2TRANSKETO-RXN]]
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* [[1TRANSKETO-RXN]]
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== Genes associated with this reaction  ==
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* [[RIBULP3EPIM-RXN]]
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Genes have been associated with this reaction based on different elements listed below.
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* [[Ec-07_002870]]
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** ESILICULOSUS_GENOME
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***EC-NUMBER
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* [[Ec-07_007310]]
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** ESILICULOSUS_GENOME
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***EC-NUMBER
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* [[Ec-11_000360]]
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** ESILICULOSUS_GENOME
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***EC-NUMBER
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* [[Ec-21_003470]]
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** ESILICULOSUS_GENOME
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***EC-NUMBER
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* [[Ec-05_003640]]
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** ESILICULOSUS_GENOME
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***AUTOMATED-NAME-MATCH
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* [[Ec-27_006560]]
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** ESILICULOSUS_GENOME
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***AUTOMATED-NAME-MATCH
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== Pathways  ==
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* [[PWY-561]], superpathway of glyoxylate cycle and fatty acid degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-561 PWY-561]
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** '''6''' reactions found over '''8''' reactions in the full pathway
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* [[PWY-4302]], aerobic respiration III (alternative oxidase pathway): [http://metacyc.org/META/NEW-IMAGE?object=PWY-4302 PWY-4302]
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** '''3''' reactions found over '''3''' reactions in the full pathway
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* [[PWY-3781]], aerobic respiration I (cytochrome c): [http://metacyc.org/META/NEW-IMAGE?object=PWY-3781 PWY-3781]
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** '''4''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-7279]], aerobic respiration II (cytochrome c) (yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7279 PWY-7279]
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** '''4''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-6728]], methylaspartate cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6728 PWY-6728]
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** '''11''' reactions found over '''18''' reactions in the full pathway
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* [[PWY0-1329]], succinate to cytochrome bo oxidase electron transfer: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1329 PWY0-1329]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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* [[PWY0-1353]], succinate to cytochrome bd oxidase electron transfer: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1353 PWY0-1353]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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* [[PWY-5690]], TCA cycle II (plants and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5690 PWY-5690]
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** '''8''' reactions found over '''9''' reactions in the full pathway
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* [[PWY66-398]], TCA cycle III (animals): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-398 PWY66-398]
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** '''10''' reactions found over '''11''' reactions in the full pathway
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* [[TCA]], TCA cycle I (prokaryotic): [http://metacyc.org/META/NEW-IMAGE?object=TCA TCA]
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** '''9''' reactions found over '''10''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[annotation]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
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== External links  ==
 
== External links  ==
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* RHEA:
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* CAS : 60802-29-1
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13713 13713]
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* BIGG : 34329
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* LIGAND-RXN:
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* PUBCHEM:
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** [http://www.genome.jp/dbget-bin/www_bget?R02164 R02164]
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=5459820 5459820]
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* PIR:
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* HMDB : HMDB00868
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T50081 T50081]
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* LIGAND-CPD:
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T46878 T46878]
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** [http://www.genome.jp/dbget-bin/www_bget?C00231 C00231]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T41753 T41753]
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* CHEMSPIDER:
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T37633 T37633]
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** [http://www.chemspider.com/Chemical-Structure.20015725.html 20015725]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T11245 T11245]
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* CHEBI:
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T11229 T11229]
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=57737 57737]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T11218 T11218]
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* METABOLIGHTS : MTBLC57737
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S78180 S78180]
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{{#set: smiles=C(OP([O-])(=O)[O-])C(O)C(O)C(=O)CO}}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S78179 S78179]
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{{#set: inchi key=InChIKey=FNZLKVNUWIIPSJ-RFZPGFLSSA-L}}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S78178 S78178]
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{{#set: common name=D-xylulose 5-phosphate}}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S74810 S74810]
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{{#set: molecular weight=228.095    }}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S62756 S62756]
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{{#set: common name=xylulose 5-phosphate|xylulose-phosphate|D-xylulose-5-P|xylulose-P}}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S62755 S62755]
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{{#set: produced by=XYLULOKIN-RXN}}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S59115 S59115]
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{{#set: reversible reaction associated=2TRANSKETO-RXN|1TRANSKETO-RXN|RIBULP3EPIM-RXN}}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S59114 S59114]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S56817 S56817]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S34793 S34793]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S26978 S26978]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S25968 S25968]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=RDBYIS RDBYIS]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=PT0094 PT0094]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JX0336 JX0336]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=I38895 I38895]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=D81388 D81388]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=D71712 D71712]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=D32394 D32394]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C32394 C32394]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=B58930 B58930]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=B32394 B32394]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A56660 A56660]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A45159 A45159]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A42792 A42792]
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* UNIPROT:
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** [http://www.uniprot.org/uniprot/P35720 P35720]
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** [http://www.uniprot.org/uniprot/Q26266 Q26266]
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** [http://www.uniprot.org/uniprot/P21913 P21913]
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** [http://www.uniprot.org/uniprot/Q9ZZR2 Q9ZZR2]
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** [http://www.uniprot.org/uniprot/P21911 P21911]
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** [http://www.uniprot.org/uniprot/Q9ZEA1 Q9ZEA1]
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** [http://www.uniprot.org/uniprot/Q9PI67 Q9PI67]
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** [http://www.uniprot.org/uniprot/P21912 P21912]
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** [http://www.uniprot.org/uniprot/P31040 P31040]
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** [http://www.uniprot.org/uniprot/Q9CQA3 Q9CQA3]
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** [http://www.uniprot.org/uniprot/P21801 P21801]
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** [http://www.uniprot.org/uniprot/P35721 P35721]
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** [http://www.uniprot.org/uniprot/P32420 P32420]
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** [http://www.uniprot.org/uniprot/Q00711 Q00711]
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** [http://www.uniprot.org/uniprot/P47052 P47052]
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** [http://www.uniprot.org/uniprot/P48932 P48932]
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** [http://www.uniprot.org/uniprot/P48934 P48934]
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** [http://www.uniprot.org/uniprot/P48935 P48935]
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** [http://www.uniprot.org/uniprot/P48933 P48933]
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** [http://www.uniprot.org/uniprot/P73723 P73723]
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** [http://www.uniprot.org/uniprot/P80481 P80481]
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** [http://www.uniprot.org/uniprot/P80482 P80482]
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** [http://www.uniprot.org/uniprot/P80480 P80480]
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** [http://www.uniprot.org/uniprot/Q9T584 Q9T584]
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** [http://www.uniprot.org/uniprot/P80479 P80479]
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** [http://www.uniprot.org/uniprot/P80478 P80478]
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** [http://www.uniprot.org/uniprot/Q09508 Q09508]
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** [http://www.uniprot.org/uniprot/Q59659 Q59659]
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** [http://www.uniprot.org/uniprot/Q9UTJ7 Q9UTJ7]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain}}
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{{#set: common name=SDH1, succinate dehydrogenase subunit 1}}
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{{#set: common name=SDH3, succinate dehydrogenase subunit 3}}
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{{#set: common name=SDH2, succinate dehydrogenase subunit 2}}
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{{#set: common name=SDH4, succinate dehydrogenase subunit 4}}
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{{#set: ec number=EC-1.3.5.1}}
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{{#set: gene associated=Ec-07_002870|Ec-07_007310|Ec-11_000360|Ec-21_003470|Ec-05_003640|Ec-27_006560}}
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{{#set: in pathway=PWY-561|PWY-4302|PWY-3781|PWY-7279|PWY-6728|PWY0-1329|PWY0-1353|PWY-5690|PWY66-398|TCA}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome}}
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{{#set: reconstruction tool=pathwaytools}}
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Latest revision as of 20:34, 21 March 2018

Metabolite XYLULOSE-5-PHOSPHATE

  • smiles:
    • C(OP([O-])(=O)[O-])C(O)C(O)C(=O)CO
  • inchi key:
    • InChIKey=FNZLKVNUWIIPSJ-RFZPGFLSSA-L
  • common name:
    • D-xylulose 5-phosphate
  • molecular weight:
    • 228.095
  • Synonym(s):
    • xylulose 5-phosphate
    • xylulose-phosphate
    • D-xylulose-5-P
    • xylulose-P

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

External links

  • CAS : 60802-29-1
  • BIGG : 34329
  • PUBCHEM:
  • HMDB : HMDB00868
  • LIGAND-CPD:
  • CHEMSPIDER:
  • CHEBI:
  • METABOLIGHTS : MTBLC57737
"C(OP([O-])(=O)[O-])C(O)C(O)C(=O)CO" cannot be used as a page name in this wiki.




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