Difference between revisions of "PWY-5316"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=H2NEOPTERINALDOL-RXN H2NEOPTERINALDOL-RXN] == * direction: ** REVERSIBLE * ec number: ** [http://en...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5316 PWY-5316] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4070 TAX-40...")
 
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=H2NEOPTERINALDOL-RXN H2NEOPTERINALDOL-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5316 PWY-5316] ==
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* direction:
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* taxonomic range:
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** REVERSIBLE
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4070 TAX-4070]
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* ec number:
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* common name:
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** [http://enzyme.expasy.org/EC/4.1.2.25 EC-4.1.2.25]
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** nicotine biosynthesis
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''3''' reactions found over '''9''' reactions in the full pathway
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** 1 [[DIHYDRO-NEO-PTERIN]][c] '''<=>''' 1 [[AMINO-OH-HYDROXYMETHYL-DIHYDROPTERIDINE]][c] '''+''' 1 [[GLYCOLALDEHYDE]][c]
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* [[L-ASPARTATE-OXID-RXN]]
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* With common name(s):
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** 1 associated gene(s):
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** 1 7,8-dihydroneopterin[c] '''<=>''' 1 6-(hydroxymethyl)-7,8-dihydropterin[c] '''+''' 1 glycolaldehyde[c]
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*** [[Ec-05_003640]]
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** 1 reconstruction source(s) associated:
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== Genes associated with this reaction  ==
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*** [[annotation-esiliculosus_genome]]
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== Pathways  ==
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* [[QUINOLINATE-SYNTHA-RXN]]
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* [[PWY-7539]], 6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7539 PWY-7539]
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** 1 associated gene(s):
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** '''4''' reactions found over '''5''' reactions in the full pathway
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*** [[Ec-25_002400]]
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* [[PWY-6148]], tetrahydromethanopterin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6148 PWY-6148]
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** 1 reconstruction source(s) associated:
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** '''2''' reactions found over '''14''' reactions in the full pathway
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*** [[annotation-esiliculosus_genome]]
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* [[PWY-6797]], 6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6797 PWY-6797]
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* [[QUINOPRIBOTRANS-RXN]]
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** '''3''' reactions found over '''7''' reactions in the full pathway
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** 3 associated gene(s):
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* [[PWY-6147]], 6-hydroxymethyl-dihydropterin diphosphate biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6147 PWY-6147]
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*** [[Ec-27_002350]]
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** '''5''' reactions found over '''5''' reactions in the full pathway
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*** [[Ec-09_003390]]
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== Reconstruction information  ==
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*** [[Ec-05_000790]]
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* Category: [[gap-filling]]
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** 2 reconstruction source(s) associated:
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** Source: [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
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*** [[annotation-esiliculosus_genome]]
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*** Tool: [[meneco]]
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*** [[orthology-aragem]]
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**** Comment: [[added for gapfilling]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-13057 RXN-13057]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-13058 RXN-13058]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-13059 RXN-13059]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-13060 RXN-13060]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8248 RXN-8248]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8444 RXN-8444]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: taxonomic range=TAX-4070}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10540 10540]
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{{#set: common name=nicotine biosynthesis}}
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* LIGAND-RXN:
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{{#set: reaction found=3}}
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** [http://www.genome.jp/dbget-bin/www_bget?R03504 R03504]
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{{#set: total reaction=9}}
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* UNIPROT:
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{{#set: completion rate=33.0}}
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** [http://www.uniprot.org/uniprot/P22291 P22291]
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** [http://www.uniprot.org/uniprot/Q9CGE4 Q9CGE4]
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** [http://www.uniprot.org/uniprot/Q9JUL3 Q9JUL3]
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** [http://www.uniprot.org/uniprot/P28823 P28823]
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** [http://www.uniprot.org/uniprot/P29251 P29251]
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** [http://www.uniprot.org/uniprot/P53848 P53848]
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** [http://www.uniprot.org/uniprot/O75013 O75013]
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{{#set: direction=REVERSIBLE}}
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{{#set: ec number=EC-4.1.2.25}}
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{{#set: in pathway=PWY-7539|PWY-6148|PWY-6797|PWY-6147}}
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{{#set: reconstruction category=gap-filling}}
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{{#set: reconstruction source=gap-filling-gapfilling_solution_with_meneco_draft_medium}}
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{{#set: reconstruction tool=meneco}}
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{{#set: reconstruction comment=added for gapfilling}}
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Latest revision as of 20:35, 21 March 2018

Pathway PWY-5316

  • taxonomic range:
  • common name:
    • nicotine biosynthesis
  • Synonym(s):

Reaction(s) found

3 reactions found over 9 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=PWY-5316&oldid=27932"