Difference between revisions of "RXN-11109"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-564 CPD-564] == * smiles: ** C(CC([N+])C(=O)[O-])SCC1(OC(O)C(O)C(O)1) * inchi key: ** InChI...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11109 RXN-11109] == * direction: ** LEFT-TO-RIGHT * common name: ** RNA helicase family protein...")
 
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-564 CPD-564] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11109 RXN-11109] ==
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* smiles:
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* direction:
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** C(CC([N+])C(=O)[O-])SCC1(OC(O)C(O)C(O)1)
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** LEFT-TO-RIGHT
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* inchi key:
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** InChIKey=IQFWYNFDWRYSRA-OEQWSMLSSA-N
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* common name:
 
* common name:
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** S-ribosyl-L-homocysteine
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** RNA helicase family protein
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* molecular weight:
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** Probable RNA helicase SDE3
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** 267.296   
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* ec number:
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** [http://enzyme.expasy.org/EC/3.6.4.13 EC-3.6.4.13]
 
* Synonym(s):
 
* Synonym(s):
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** S-Ribosylhomocysteine
 
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** Ribose-5-S-homocysteine
 
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** S-D-ribosyl-L-homocysteine
 
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** ribose-5-S-homocysteine
 
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** S-ribosylhomocysteine
 
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** S-(5-deoxy-D-ribos-5-yl)-L-homocysteine
 
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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== Reaction(s) known to produce the compound ==
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* With identifiers:
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* [[ADENOSYLHOMOCYSTEINE-NUCLEOSIDASE-RXN]]
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** 1 [[Wound-RNA]][c] '''+''' 1 [[WATER]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[Unwound-RNA]][c] '''+''' 1 [[Pi]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[ADP]][c]
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== Reaction(s) of unknown directionality ==
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* With common name(s):
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** 1 wound RNA[c] '''+''' 1 H2O[c] '''+''' 1 ATP[c] '''=>''' 1 an unwound RNA[c] '''+''' 1 phosphate[c] '''+''' 1 H+[c] '''+''' 1 ADP[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Ec-12_002420]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[Ec-07_001080]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: AUTOMATED-NAME-MATCH
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== Pathways  ==
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== Reconstruction information  ==
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* Category: [[annotation]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* CAS : 37558-16-0
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{{#set: direction=LEFT-TO-RIGHT}}
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* PUBCHEM:
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{{#set: common name=RNA helicase family protein}}
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=25245776 25245776]
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{{#set: common name=Probable RNA helicase SDE3}}
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* CHEBI:
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{{#set: ec number=EC-3.6.4.13}}
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=17575 17575]
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{{#set: gene associated=Ec-12_002420|Ec-07_001080}}
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* BIGG : 42044
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{{#set: in pathway=}}
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* LIGAND-CPD:
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{{#set: reconstruction category=annotation}}
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** [http://www.genome.jp/dbget-bin/www_bget?C03539 C03539]
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{{#set: reconstruction source=annotation-esiliculosus_genome}}
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{{#set: smiles=C(CC([N+])C(=O)[O-])SCC1(OC(O)C(O)C(O)1)}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: inchi key=InChIKey=IQFWYNFDWRYSRA-OEQWSMLSSA-N}}
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{{#set: common name=S-ribosyl-L-homocysteine}}
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{{#set: molecular weight=267.296    }}
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{{#set: common name=S-Ribosylhomocysteine|Ribose-5-S-homocysteine|S-D-ribosyl-L-homocysteine|ribose-5-S-homocysteine|S-ribosylhomocysteine|S-(5-deoxy-D-ribos-5-yl)-L-homocysteine}}
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{{#set: produced by=ADENOSYLHOMOCYSTEINE-NUCLEOSIDASE-RXN}}
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Latest revision as of 19:35, 21 March 2018

Reaction RXN-11109

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • RNA helicase family protein
    • Probable RNA helicase SDE3
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 wound RNA[c] + 1 H2O[c] + 1 ATP[c] => 1 an unwound RNA[c] + 1 phosphate[c] + 1 H+[c] + 1 ADP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=RXN-11109&oldid=27959"