Difference between revisions of "UDPREDUCT-RXN"

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(Created page with "Category:Gene == Gene Ec-18_002350 == * left end position: ** 2274262 * transcription direction: ** NEGATIVE * right end position: ** 2282440 * centisome position: ** 46.1...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=UDPREDUCT-RXN UDPREDUCT-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** Ribonucleoside-diph...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Ec-18_002350 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=UDPREDUCT-RXN UDPREDUCT-RXN] ==
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* left end position:
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* direction:
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** 2274262
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** LEFT-TO-RIGHT
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* transcription direction:
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* common name:
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** NEGATIVE
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** Ribonucleoside-diphosphate reductase small chain
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* right end position:
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** ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor
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** 2282440
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** EsV-1-128
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* centisome position:
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** EsV-1-180
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** 46.163315   
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* ec number:
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** [http://enzyme.expasy.org/EC/1.17.4.1 EC-1.17.4.1]
 
* Synonym(s):
 
* Synonym(s):
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** Esi_0053_0082
 
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** Esi0053_0082
 
  
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== Reactions associated ==
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== Reaction Formula ==
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* [[2.1.1.71-RXN]]
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* With identifiers:
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** esiliculosus_genome
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** 1 [[UDP]][c] '''+''' 1 [[Red-Thioredoxin]][c] '''=>''' 1 [[Ox-Thioredoxin]][c] '''+''' 1 [[DUDP]][c] '''+''' 1 [[WATER]][c]
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***automated-name-match
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* With common name(s):
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* [[RXN4FS-2]]
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** 1 UDP[c] '''+''' 1 a reduced thioredoxin[c] '''=>''' 1 an oxidized thioredoxin[c] '''+''' 1 dUDP[c] '''+''' 1 H2O[c]
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** esiliculosus_genome
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***automated-name-match
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== Genes associated with this reaction  ==
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== Pathways associated ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[PWY-6825]]
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* Gene: [[Ec-06_005120]]
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* [[PWY4FS-3]]
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** Source: [[annotation-esiliculosus_genome]]
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* [[PWY4FS-4]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-aragem]]
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* Gene: [[Ec-21_002920]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: GO-TERM
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** Source: [[orthology-aragem]]
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* Gene: [[Ec-06_005570]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: EC-NUMBER
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* Gene: [[Ec-11_002180]]
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** Source: [[orthology-aragem]]
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* Gene: [[Ec-17_003700]]
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** Source: [[orthology-aragem]]
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* Gene: [[Ec-11_002170]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: GO-TERM
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* Gene: [[Ec-19_000440]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-aragem]]
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== Pathways ==
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* [[PWY-7184]], pyrimidine deoxyribonucleotides de novo biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7184 PWY-7184]
 +
** '''9''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-6545]], pyrimidine deoxyribonucleotides de novo biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6545 PWY-6545]
 +
** '''8''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY0-166]], superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli): [http://metacyc.org/META/NEW-IMAGE?object=PWY0-166 PWY0-166]
 +
** '''14''' reactions found over '''17''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
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** Source: [[orthology-aragem]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: left end position=2274262}}
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* RHEA:
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{{#set: transcription direction=NEGATIVE}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=28026 28026]
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{{#set: right end position=2282440}}
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* LIGAND-RXN:
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{{#set: centisome position=46.163315    }}
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** [http://www.genome.jp/dbget-bin/www_bget?R02018 R02018]
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{{#set: common name=Esi_0053_0082|Esi0053_0082}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: reaction associated=2.1.1.71-RXN|RXN4FS-2}}
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{{#set: common name=Ribonucleoside-diphosphate reductase small chain}}
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{{#set: pathway associated=PWY-6825|PWY4FS-3|PWY4FS-4}}
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{{#set: common name=ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor}}
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{{#set: common name=EsV-1-128}}
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{{#set: common name=EsV-1-180}}
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{{#set: ec number=EC-1.17.4.1}}
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{{#set: gene associated=Ec-06_005120|Ec-21_002920|Ec-06_005570|Ec-11_002180|Ec-17_003700|Ec-11_002170|Ec-19_000440}}
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{{#set: in pathway=PWY-7184|PWY-6545|PWY0-166}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 19:35, 21 March 2018

Reaction UDPREDUCT-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Ribonucleoside-diphosphate reductase small chain
    • ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor
    • EsV-1-128
    • EsV-1-180
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 UDP[c] + 1 a reduced thioredoxin[c] => 1 an oxidized thioredoxin[c] + 1 dUDP[c] + 1 H2O[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7184, pyrimidine deoxyribonucleotides de novo biosynthesis I: PWY-7184
    • 9 reactions found over 9 reactions in the full pathway
  • PWY-6545, pyrimidine deoxyribonucleotides de novo biosynthesis III: PWY-6545
    • 8 reactions found over 9 reactions in the full pathway
  • PWY0-166, superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli): PWY0-166
    • 14 reactions found over 17 reactions in the full pathway

Reconstruction information

External links






Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=UDPREDUCT-RXN&oldid=28025"