Difference between revisions of "RXN-6201"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=UDPREDUCT-RXN UDPREDUCT-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** Ribonucleoside-diph...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-6201 RXN-6201] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/4....")
 
(One intermediate revision by the same user not shown)
Line 1: Line 1:
 
[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=UDPREDUCT-RXN UDPREDUCT-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-6201 RXN-6201] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
−
* common name:
 
−
** Ribonucleoside-diphosphate reductase small chain
 
−
** ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor
 
−
** EsV-1-128
 
−
** EsV-1-180
 
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/1.17.4.1 EC-1.17.4.1]
+
** [http://enzyme.expasy.org/EC/4.1.1.97 EC-4.1.1.97]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[UDP]][c] '''+''' 1 [[Red-Thioredoxin]][c] '''=>''' 1 [[Ox-Thioredoxin]][c] '''+''' 1 [[DUDP]][c] '''+''' 1 [[WATER]][c]
+
** 1 [[CPD-5821]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[S-ALLANTOIN]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 UDP[c] '''+''' 1 a reduced thioredoxin[c] '''=>''' 1 an oxidized thioredoxin[c] '''+''' 1 dUDP[c] '''+''' 1 H2O[c]
+
** 1 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline[c] '''+''' 1 H+[c] '''=>''' 1 (S)-(+)-allantoin[c] '''+''' 1 CO2[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
−
Genes have been associated with this reaction based on different elements listed below.
 
−
* [[Ec-19_000440]]
 
−
** ESILICULOSUS_GENOME
 
−
***EC-NUMBER
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-21_002920]]
 
−
** ESILICULOSUS_GENOME
 
−
***GO-TERM
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-17_003700]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-11_002180]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-06_005120]]
 
−
** ESILICULOSUS_GENOME
 
−
***EC-NUMBER
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-06_005570]]
 
−
** ESILICULOSUS_GENOME
 
−
***EC-NUMBER
 
−
* [[Ec-11_002170]]
 
−
** ESILICULOSUS_GENOME
 
−
***GO-TERM
 
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-7184]], pyrimidine deoxyribonucleotides de novo biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7184 PWY-7184]
+
* [[PWY-7394]], urate degradation to allantoin II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7394 PWY-7394]
−
** '''9''' reactions found over '''9''' reactions in the full pathway
+
** '''2''' reactions found over '''3''' reactions in the full pathway
−
* [[PWY-6545]], pyrimidine deoxyribonucleotides de novo biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6545 PWY-6545]
+
* [[PWY-5691]], urate degradation to allantoin I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5691 PWY-5691]
−
** '''8''' reactions found over '''9''' reactions in the full pathway
+
** '''3''' reactions found over '''3''' reactions in the full pathway
−
* [[PWY0-166]], superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli): [http://metacyc.org/META/NEW-IMAGE?object=PWY0-166 PWY0-166]
+
−
** '''14''' reactions found over '''17''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[orthology]]
 
−
** Source: [[orthology-aragem]]
 
−
*** Tool: [[pantograph]]
 
 
* Category: [[annotation]]
 
* Category: [[annotation]]
 
** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
Line 58: Line 25:
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=28026 28026]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=26301 26301]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R02018 R02018]
+
** [http://www.genome.jp/dbget-bin/www_bget?R06604 R06604]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=Ribonucleoside-diphosphate reductase small chain}}
+
{{#set: ec number=EC-4.1.1.97}}
−
{{#set: common name=ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor}}
+
{{#set: in pathway=PWY-7394|PWY-5691}}
−
{{#set: common name=EsV-1-128}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: common name=EsV-1-180}}
+
{{#set: reconstruction source=annotation-esiliculosus_genome}}
−
{{#set: ec number=EC-1.17.4.1}}
+
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: gene associated=Ec-19_000440|Ec-21_002920|Ec-17_003700|Ec-11_002180|Ec-06_005120|Ec-06_005570|Ec-11_002170}}
+
−
{{#set: in pathway=PWY-7184|PWY-6545|PWY0-166}}
+
−
{{#set: reconstruction category=orthology|annotation}}
+
−
{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
+
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Latest revision as of 19:36, 21 March 2018

Reaction RXN-6201

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline[c] + 1 H+[c] => 1 (S)-(+)-allantoin[c] + 1 CO2[c]

Genes associated with this reaction

Pathways

  • PWY-7394, urate degradation to allantoin II: PWY-7394
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-5691, urate degradation to allantoin I: PWY-5691
    • 3 reactions found over 3 reactions in the full pathway

Reconstruction information

External links




Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=RXN-6201&oldid=28070"