Difference between revisions of "RXN-16418"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-37 CPD-37] == * smiles: ** [CH](=O)C(O)C(O)CC(=O)C(=O)[O-] * inchi key: ** InChIKey=IMUGYKF...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16418 RXN-16418] == * direction: ** LEFT-TO-RIGHT * common name: ** long chain acyl-coA synthet...")
 
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-37 CPD-37] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16418 RXN-16418] ==
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* smiles:
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* direction:
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** [CH](=O)C(O)C(O)CC(=O)C(=O)[O-]
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** LEFT-TO-RIGHT
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* inchi key:
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** InChIKey=IMUGYKFHMJLTOU-UCORVYFPSA-M
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* common name:
 
* common name:
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** 5-dehydro-4-deoxy-D-glucuronate
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** long chain acyl-coA synthetase
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* molecular weight:
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** long chain acyl-CoA synthetase
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** 175.118   
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* ec number:
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** [http://enzyme.expasy.org/EC/6.2.1.3 EC-6.2.1.3]
 
* Synonym(s):
 
* Synonym(s):
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** 4-deoxy-L-threo-5-hexosulose uronate
 
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** 4,5-dihydroxy-2,6-dioxo-hexanoate
 
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** (4S,5R)-4,5-dihydroxy-2,6-dioxohexanoate
 
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** 5-keto-4-deoxyuronate
 
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** DKI
 
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** 4-deoxy-5-ketouronic acid
 
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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== Reaction(s) known to produce the compound ==
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* With identifiers:
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== Reaction(s) of unknown directionality ==
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** 1 [[CO-A]][c] '''+''' 1 [[OCTADEC-9-ENE-118-DIOIC-ACID]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[CPD-17624]][c] '''+''' 1 [[AMP]][c] '''+''' 1 [[PPI]][c]
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* [[RXN-16475]]
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* With common name(s):
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** 1 coenzyme A[c] '''+''' 1 α,ω-9Z-octadecenedioate[c] '''+''' 1 ATP[c] '''=>''' 1 ω-carboxy-(9Z)-octadec-9-enoyl-CoA[c] '''+''' 1 AMP[c] '''+''' 1 diphosphate[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Ec-03_003710]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[Ec-01_001560]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[Ec-02_006430]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[Ec-12_008720]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: AUTOMATED-NAME-MATCH
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== Pathways  ==
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* [[PWY-1121]], suberin monomers biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-1121 PWY-1121]
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** '''6''' reactions found over '''19''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[annotation]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* PUBCHEM:
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{{#set: direction=LEFT-TO-RIGHT}}
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=9548606 9548606]
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{{#set: common name=long chain acyl-coA synthetase}}
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* CHEMSPIDER:
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{{#set: common name=long chain acyl-CoA synthetase}}
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** [http://www.chemspider.com/Chemical-Structure.7827529.html 7827529]
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{{#set: ec number=EC-6.2.1.3}}
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* CHEBI:
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{{#set: gene associated=Ec-03_003710|Ec-01_001560|Ec-02_006430|Ec-12_008720}}
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=17117 17117]
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{{#set: in pathway=PWY-1121}}
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* LIGAND-CPD:
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{{#set: reconstruction category=annotation}}
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** [http://www.genome.jp/dbget-bin/www_bget?C04053 C04053]
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{{#set: reconstruction source=annotation-esiliculosus_genome}}
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{{#set: smiles=[CH](=O)C(O)C(O)CC(=O)C(=O)[O-]}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: inchi key=InChIKey=IMUGYKFHMJLTOU-UCORVYFPSA-M}}
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{{#set: common name=5-dehydro-4-deoxy-D-glucuronate}}
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{{#set: molecular weight=175.118    }}
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{{#set: common name=4-deoxy-L-threo-5-hexosulose uronate|4,5-dihydroxy-2,6-dioxo-hexanoate|(4S,5R)-4,5-dihydroxy-2,6-dioxohexanoate|5-keto-4-deoxyuronate|DKI|4-deoxy-5-ketouronic acid}}
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{{#set: reversible reaction associated=RXN-16475}}
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Latest revision as of 20:36, 21 March 2018

Reaction RXN-16418

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • long chain acyl-coA synthetase
    • long chain acyl-CoA synthetase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 coenzyme A[c] + 1 α,ω-9Z-octadecenedioate[c] + 1 ATP[c] => 1 ω-carboxy-(9Z)-octadec-9-enoyl-CoA[c] + 1 AMP[c] + 1 diphosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-1121, suberin monomers biosynthesis: PWY-1121
    • 6 reactions found over 19 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=RXN-16418&oldid=28144"