Difference between revisions of "RXN-16418"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=GLY GLY] == * smiles: ** C([N+])C([O-])=O * inchi key: ** InChIKey=DHMQDGOQFOQNFH-UHFFFAOYSA-N...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16418 RXN-16418] == * direction: ** LEFT-TO-RIGHT * common name: ** long chain acyl-coA synthet...")
 
Line 1: Line 1:
−
[[Category:Metabolite]]
+
[[Category:Reaction]]
−
== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=GLY GLY] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16418 RXN-16418] ==
−
* smiles:
+
* direction:
−
** C([N+])C([O-])=O
+
** LEFT-TO-RIGHT
−
* inchi key:
+
−
** InChIKey=DHMQDGOQFOQNFH-UHFFFAOYSA-N
+
 
* common name:
 
* common name:
−
** glycine
+
** long chain acyl-coA synthetase
−
* molecular weight:
+
** long chain acyl-CoA synthetase
−
** 75.067   
+
* ec number:
 +
** [http://enzyme.expasy.org/EC/6.2.1.3 EC-6.2.1.3]
 
* Synonym(s):
 
* Synonym(s):
−
** G
 
−
** aminoacetic acid
 
−
** gly
 
  
−
== Reaction(s) known to consume the compound ==
+
== Reaction Formula ==
−
* [[biomass_rxn]]
+
* With identifiers:
−
* [[RXN-10821]]
+
** 1 [[CO-A]][c] '''+''' 1 [[OCTADEC-9-ENE-118-DIOIC-ACID]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[CPD-17624]][c] '''+''' 1 [[AMP]][c] '''+''' 1 [[PPI]][c]
−
* [[GLYRIBONUCSYN-RXN]]
+
* With common name(s):
−
* [[GLUTATHIONE-SYN-RXN]]
+
** 1 coenzyme A[c] '''+''' 1 α,ω-9Z-octadecenedioate[c] '''+''' 1 ATP[c] '''=>''' 1 ω-carboxy-(9Z)-octadec-9-enoyl-CoA[c] '''+''' 1 AMP[c] '''+''' 1 diphosphate[c]
−
* [[RXN-13406]]
+
 
−
* [[GLYCINE--TRNA-LIGASE-RXN]]
+
== Genes associated with this reaction  ==
−
== Reaction(s) known to produce the compound ==
+
Genes have been associated with this reaction based on different elements listed below.
−
* [[RXN-6622]]
+
* Gene: [[Ec-03_003710]]
−
* [[2.3.2.15-RXN]]
+
** Source: [[annotation-esiliculosus_genome]]
−
* [[RXN-13677]]
+
*** Assignment: AUTOMATED-NAME-MATCH
−
* [[RXN-9896]]
+
* Gene: [[Ec-01_001560]]
−
* [[THREONINE-ALDOLASE-RXN]]
+
** Source: [[annotation-esiliculosus_genome]]
−
* [[RXN-6642]]
+
*** Assignment: AUTOMATED-NAME-MATCH
−
* [[RXN0-5234]]
+
* Gene: [[Ec-02_006430]]
−
== Reaction(s) of unknown directionality ==
+
** Source: [[annotation-esiliculosus_genome]]
−
* [[ALANINE--GLYOXYLATE-AMINOTRANSFERASE-RXN]]
+
*** Assignment: AUTOMATED-NAME-MATCH
−
* [[GCVMULTI-RXN]]
+
* Gene: [[Ec-12_008720]]
−
* [[GCVMULTI-RXN-GLY/THF/NAD//METHYLENE-THF/AMMONIUM/CARBON-DIOXIDE/NADH.56.]]
+
** Source: [[annotation-esiliculosus_genome]]
−
* [[GLYOHMETRANS-RXN-SER/THF//GLY/METHYLENE-THF/WATER.33.]]
+
*** Assignment: AUTOMATED-NAME-MATCH
−
* [[GCVP-RXN]]
+
== Pathways  ==
−
* [[GLYOHMETRANS-RXN]]
+
* [[PWY-1121]], suberin monomers biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-1121 PWY-1121]
 +
** '''6''' reactions found over '''19''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[annotation]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* CAS : 56-40-6
+
{{#set: direction=LEFT-TO-RIGHT}}
−
* BIGG : 33610
+
{{#set: common name=long chain acyl-coA synthetase}}
−
* DRUGBANK : DB00145
+
{{#set: common name=long chain acyl-CoA synthetase}}
−
* PUBCHEM:
+
{{#set: ec number=EC-6.2.1.3}}
−
** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=5257127 5257127]
+
{{#set: gene associated=Ec-03_003710|Ec-01_001560|Ec-02_006430|Ec-12_008720}}
−
* KNAPSACK : C00001361
+
{{#set: in pathway=PWY-1121}}
−
* HMDB : HMDB00123
+
{{#set: reconstruction category=annotation}}
−
* LIGAND-CPD:
+
{{#set: reconstruction source=annotation-esiliculosus_genome}}
−
** [http://www.genome.jp/dbget-bin/www_bget?C00037 C00037]
+
{{#set: reconstruction tool=pathwaytools}}
−
* CHEMSPIDER:
+
−
** [http://www.chemspider.com/Chemical-Structure.730.html 730]
+
−
* CHEBI:
+
−
** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=15428 15428]
+
−
* METABOLIGHTS : MTBLC15428
+
−
{{#set: smiles=C([N+])C([O-])=O}}
+
−
{{#set: inchi key=InChIKey=DHMQDGOQFOQNFH-UHFFFAOYSA-N}}
+
−
{{#set: common name=glycine}}
+
−
{{#set: molecular weight=75.067    }}
+
−
{{#set: common name=G|aminoacetic acid|gly}}
+
−
{{#set: consumed by=biomass_rxn|RXN-10821|GLYRIBONUCSYN-RXN|GLUTATHIONE-SYN-RXN|RXN-13406|GLYCINE--TRNA-LIGASE-RXN}}
+
−
{{#set: produced by=RXN-6622|2.3.2.15-RXN|RXN-13677|RXN-9896|THREONINE-ALDOLASE-RXN|RXN-6642|RXN0-5234}}
+
−
{{#set: reversible reaction associated=ALANINE--GLYOXYLATE-AMINOTRANSFERASE-RXN|GCVMULTI-RXN|GCVMULTI-RXN-GLY/THF/NAD//METHYLENE-THF/AMMONIUM/CARBON-DIOXIDE/NADH.56.|GLYOHMETRANS-RXN-SER/THF//GLY/METHYLENE-THF/WATER.33.|GCVP-RXN|GLYOHMETRANS-RXN}}
+

Latest revision as of 20:36, 21 March 2018

Reaction RXN-16418

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • long chain acyl-coA synthetase
    • long chain acyl-CoA synthetase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 coenzyme A[c] + 1 α,ω-9Z-octadecenedioate[c] + 1 ATP[c] => 1 ω-carboxy-(9Z)-octadec-9-enoyl-CoA[c] + 1 AMP[c] + 1 diphosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-1121, suberin monomers biosynthesis: PWY-1121
    • 6 reactions found over 19 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=RXN-16418&oldid=28144"