Difference between revisions of "RXN-14971"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=TransportSeed_NA+ TransportSeed_NA+] == * direction: ** LEFT-TO-RIGHT * Synonym(s): == Reaction Fo...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14971 RXN-14971] == * direction: ** LEFT-TO-RIGHT * common name: ** Succinate dehydrogenase/fum...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=TransportSeed_NA+ TransportSeed_NA+] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14971 RXN-14971] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 +
* common name:
 +
** Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
 +
** SDH1, succinate dehydrogenase subunit 1
 +
** SDH3, succinate dehydrogenase subunit 3
 +
** SDH2, succinate dehydrogenase subunit 2
 +
** SDH4, succinate dehydrogenase subunit 4
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/1.3.5.1 EC-1.3.5.1]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[NA+]][e] '''=>''' 1.0 [[NA+]][c]
+
** 1 [[ETR-Quinones]][c] '''+''' 1 [[SUC]][c] '''=>''' 1 [[ETR-Quinols]][c] '''+''' 1 [[FUM]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 Na+[e] '''=>''' 1.0 Na+[c]
+
** 1 an electron-transfer quinone[c] '''+''' 1 succinate[c] '''=>''' 1 an electron-transfer quinol[c] '''+''' 1 fumarate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[Ec-05_003640]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Ec-21_003470]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Ec-07_002870]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Ec-11_000360]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Ec-27_006560]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Ec-07_007310]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
 +
* [[PWY-7254]], TCA cycle VII (acetate-producers): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7254 PWY-7254]
 +
** '''7''' reactions found over '''9''' reactions in the full pathway
 +
* [[P105-PWY]], TCA cycle IV (2-oxoglutarate decarboxylase): [http://metacyc.org/META/NEW-IMAGE?object=P105-PWY P105-PWY]
 +
** '''9''' reactions found over '''11''' reactions in the full pathway
 +
* [[PWY-6969]], TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6969 PWY-6969]
 +
** '''10''' reactions found over '''12''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[manual]]:
+
* Category: [[annotation]]
−
** [[added to manage seeds from extracellular to cytosol compartment]]
+
** Source: [[annotation-esiliculosus_genome]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: in pathway=}}
+
{{#set: common name=Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain}}
−
{{#set: reconstruction category=manual}}
+
{{#set: common name=SDH1, succinate dehydrogenase subunit 1}}
−
{{#set: reconstruction source=added to manage seeds from extracellular to cytosol compartment}}
+
{{#set: common name=SDH3, succinate dehydrogenase subunit 3}}
 +
{{#set: common name=SDH2, succinate dehydrogenase subunit 2}}
 +
{{#set: common name=SDH4, succinate dehydrogenase subunit 4}}
 +
{{#set: ec number=EC-1.3.5.1}}
 +
{{#set: gene associated=Ec-05_003640|Ec-21_003470|Ec-07_002870|Ec-11_000360|Ec-27_006560|Ec-07_007310}}
 +
{{#set: in pathway=PWY-7254|P105-PWY|PWY-6969}}
 +
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction source=annotation-esiliculosus_genome}}
 +
{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 19:37, 21 March 2018

Reaction RXN-14971

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
    • SDH1, succinate dehydrogenase subunit 1
    • SDH3, succinate dehydrogenase subunit 3
    • SDH2, succinate dehydrogenase subunit 2
    • SDH4, succinate dehydrogenase subunit 4
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 an electron-transfer quinone[c] + 1 succinate[c] => 1 an electron-transfer quinol[c] + 1 fumarate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7254, TCA cycle VII (acetate-producers): PWY-7254
    • 7 reactions found over 9 reactions in the full pathway
  • P105-PWY, TCA cycle IV (2-oxoglutarate decarboxylase): P105-PWY
    • 9 reactions found over 11 reactions in the full pathway
  • PWY-6969, TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase): PWY-6969
    • 10 reactions found over 12 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=RXN-14971&oldid=28239"