Difference between revisions of "GDPMANDEHYDRA-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=NARINGENIN-CHALCONE-SYNTHASE-RXN NARINGENIN-CHALCONE-SYNTHASE-RXN] == * direction: ** LEFT-TO-RIGHT...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GDPMANDEHYDRA-RXN GDPMANDEHYDRA-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** GDP-mannose...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=NARINGENIN-CHALCONE-SYNTHASE-RXN NARINGENIN-CHALCONE-SYNTHASE-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GDPMANDEHYDRA-RXN GDPMANDEHYDRA-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 +
* common name:
 +
** GDP-mannose 4,6-dehydratase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.3.1.74 EC-2.3.1.74]
+
** [http://enzyme.expasy.org/EC/4.2.1.47 EC-4.2.1.47]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[P-COUMAROYL-COA]][c] '''+''' 3 [[MALONYL-COA]][c] '''+''' 3 [[PROTON]][c] '''=>''' 4 [[CO-A]][c] '''+''' 1 [[APIGENIN]][c] '''+''' 3 [[CARBON-DIOXIDE]][c]
+
** 1 [[GDP-MANNOSE]][c] '''=>''' 1 [[GDP-4-DEHYDRO-6-DEOXY-D-MANNOSE]][c] '''+''' 1 [[WATER]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 4-coumaroyl-CoA[c] '''+''' 3 malonyl-CoA[c] '''+''' 3 H+[c] '''=>''' 4 coenzyme A[c] '''+''' 1 2',4,4',6'-tetrahydroxychalcone[c] '''+''' 3 CO2[c]
+
** 1 GDP-α-D-mannose[c] '''=>''' 1 GDP-4-dehydro-6-deoxy-α-D-mannose[c] '''+''' 1 H2O[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Ec-07_003670]]
+
* Gene: [[Ec-28_003400]]
−
** [[pantograph]]-[[aragem]]
+
** Source: [[annotation-esiliculosus_genome]]
−
* [[Ec-07_006660]]
+
*** Assignment: GO-TERM
−
** [[pantograph]]-[[aragem]]
+
** Source: [[orthology-aragem]]
−
* [[Ec-02_004580]]
+
* Gene: [[Ec-11_005510]]
−
** [[pantograph]]-[[aragem]]
+
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
 +
** Source: [[orthology-aragem]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-6316]], aromatic polyketides biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6316 PWY-6316]
+
* [[GDPRHAMSYN-PWY]], GDP-D-rhamnose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=GDPRHAMSYN-PWY GDPRHAMSYN-PWY]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-7573]], GDP-mycosamine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7573 PWY-7573]
 +
** '''1''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-5740]], GDP-L-colitose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5740 PWY-5740]
 +
** '''1''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-66]], GDP-L-fucose biosynthesis I (from GDP-D-mannose): [http://metacyc.org/META/NEW-IMAGE?object=PWY-66 PWY-66]
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-5738]], GDP-6-deoxy-D-talose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5738 PWY-5738]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-5739]], GDP-D-perosamine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5739 PWY-5739]
 
** '''1''' reactions found over '''2''' reactions in the full pathway
 
** '''1''' reactions found over '''2''' reactions in the full pathway
−
* [[PWY-7397]], naringenin biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7397 PWY-7397]
 
−
** '''3''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY1F-FLAVSYN]], flavonoid biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY1F-FLAVSYN PWY1F-FLAVSYN]
 
−
** '''5''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-5135]], xanthohumol biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5135 PWY-5135]
 
−
** '''2''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-6787]], flavonoid biosynthesis (in equisetum): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6787 PWY-6787]
 
−
** '''6''' reactions found over '''10''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
 
** Source: [[orthology-aragem]]
 
** Source: [[orthology-aragem]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11128 11128]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23820 23820]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01613 R01613]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00888 R00888]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/Q43188 Q43188]
+
** [http://www.uniprot.org/uniprot/Q84439 Q84439]
−
** [http://www.uniprot.org/uniprot/O04934 O04934]
+
−
** [http://www.uniprot.org/uniprot/P17957 P17957]
+
−
** [http://www.uniprot.org/uniprot/P30081 P30081]
+
−
** [http://www.uniprot.org/uniprot/P30080 P30080]
+
−
** [http://www.uniprot.org/uniprot/Q9S9C0 Q9S9C0]
+
−
** [http://www.uniprot.org/uniprot/Q9S9B9 Q9S9B9]
+
−
** [http://www.uniprot.org/uniprot/P23419 P23419]
+
−
** [http://www.uniprot.org/uniprot/P26018 P26018]
+
−
** [http://www.uniprot.org/uniprot/P22928 P22928]
+
−
** [http://www.uniprot.org/uniprot/P30079 P30079]
+
−
** [http://www.uniprot.org/uniprot/Q01287 Q01287]
+
−
** [http://www.uniprot.org/uniprot/Q01288 Q01288]
+
−
** [http://www.uniprot.org/uniprot/P51078 P51078]
+
−
** [http://www.uniprot.org/uniprot/P51080 P51080]
+
−
** [http://www.uniprot.org/uniprot/P30078 P30078]
+
−
** [http://www.uniprot.org/uniprot/Q01286 Q01286]
+
−
** [http://www.uniprot.org/uniprot/P30073 P30073]
+
−
** [http://www.uniprot.org/uniprot/P30074 P30074]
+
−
** [http://www.uniprot.org/uniprot/P30076 P30076]
+
−
** [http://www.uniprot.org/uniprot/P30077 P30077]
+
−
** [http://www.uniprot.org/uniprot/P51089 P51089]
+
−
** [http://www.uniprot.org/uniprot/P51075 P51075]
+
−
** [http://www.uniprot.org/uniprot/P16107 P16107]
+
−
** [http://www.uniprot.org/uniprot/P51077 P51077]
+
−
** [http://www.uniprot.org/uniprot/P51079 P51079]
+
−
** [http://www.uniprot.org/uniprot/P30075 P30075]
+
−
** [http://www.uniprot.org/uniprot/P51081 P51081]
+
−
** [http://www.uniprot.org/uniprot/P51082 P51082]
+
−
** [http://www.uniprot.org/uniprot/P48390 P48390]
+
−
** [http://www.uniprot.org/uniprot/P48405 P48405]
+
−
** [http://www.uniprot.org/uniprot/P48406 P48406]
+
−
** [http://www.uniprot.org/uniprot/P23569 P23569]
+
−
** [http://www.uniprot.org/uniprot/P13416 P13416]
+
−
** [http://www.uniprot.org/uniprot/P13417 P13417]
+
−
** [http://www.uniprot.org/uniprot/P17818 P17818]
+
−
** [http://www.uniprot.org/uniprot/P13114 P13114]
+
−
** [http://www.uniprot.org/uniprot/P08894 P08894]
+
−
** [http://www.uniprot.org/uniprot/P22924 P22924]
+
−
** [http://www.uniprot.org/uniprot/P22925 P22925]
+
−
** [http://www.uniprot.org/uniprot/P22926 P22926]
+
−
** [http://www.uniprot.org/uniprot/P22927 P22927]
+
−
** [http://www.uniprot.org/uniprot/P06515 P06515]
+
−
** [http://www.uniprot.org/uniprot/P24826 P24826]
+
−
** [http://www.uniprot.org/uniprot/P19168 P19168]
+
−
** [http://www.uniprot.org/uniprot/P24825 P24825]
+
−
** [http://www.uniprot.org/uniprot/P24824 P24824]
+
−
** [http://www.uniprot.org/uniprot/Q40005 Q40005]
+
−
** [http://www.uniprot.org/uniprot/Q96562 Q96562]
+
−
** [http://www.uniprot.org/uniprot/O22047 O22047]
+
−
** [http://www.uniprot.org/uniprot/O04971 O04971]
+
−
** [http://www.uniprot.org/uniprot/P48389 P48389]
+
−
** [http://www.uniprot.org/uniprot/P48398 P48398]
+
−
** [http://www.uniprot.org/uniprot/P48399 P48399]
+
−
** [http://www.uniprot.org/uniprot/Q96568 Q96568]
+
−
** [http://www.uniprot.org/uniprot/P48397 P48397]
+
−
** [http://www.uniprot.org/uniprot/O04966 O04966]
+
−
** [http://www.uniprot.org/uniprot/O04967 O04967]
+
−
** [http://www.uniprot.org/uniprot/O04968 O04968]
+
−
** [http://www.uniprot.org/uniprot/O04969 O04969]
+
−
** [http://www.uniprot.org/uniprot/O04970 O04970]
+
−
** [http://www.uniprot.org/uniprot/Q41292 Q41292]
+
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: ec number=EC-2.3.1.74}}
+
{{#set: common name=GDP-mannose 4,6-dehydratase}}
−
{{#set: gene associated=Ec-07_003670|Ec-07_006660|Ec-02_004580}}
+
{{#set: ec number=EC-4.2.1.47}}
−
{{#set: in pathway=PWY-6316|PWY-7397|PWY1F-FLAVSYN|PWY-5135|PWY-6787}}
+
{{#set: gene associated=Ec-28_003400|Ec-11_005510}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: in pathway=GDPRHAMSYN-PWY|PWY-7573|PWY-5740|PWY-66|PWY-5738|PWY-5739}}
−
{{#set: reconstruction source=orthology-aragem}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 19:38, 21 March 2018

Reaction GDPMANDEHYDRA-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • GDP-mannose 4,6-dehydratase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • GDPRHAMSYN-PWY, GDP-D-rhamnose biosynthesis: GDPRHAMSYN-PWY
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-7573, GDP-mycosamine biosynthesis: PWY-7573
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-5740, GDP-L-colitose biosynthesis: PWY-5740
    • 1 reactions found over 5 reactions in the full pathway
  • PWY-66, GDP-L-fucose biosynthesis I (from GDP-D-mannose): PWY-66
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-5738, GDP-6-deoxy-D-talose biosynthesis: PWY-5738
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-5739, GDP-D-perosamine biosynthesis: PWY-5739
    • 1 reactions found over 2 reactions in the full pathway

Reconstruction information

External links





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