Difference between revisions of "GDPMANDEHYDRA-RXN"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-2743 CPD-2743] == * smiles: ** C1(CC[CH](N(=O)(C)1)C2(=CN=CC=C2)) * inchi key: ** InChIKey=...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GDPMANDEHYDRA-RXN GDPMANDEHYDRA-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** GDP-mannose...")
 
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-2743 CPD-2743] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GDPMANDEHYDRA-RXN GDPMANDEHYDRA-RXN] ==
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* smiles:
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* direction:
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** C1(CC[CH](N(=O)(C)1)C2(=CN=CC=C2))
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** LEFT-TO-RIGHT
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* inchi key:
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** InChIKey=RWFBQHICRCUQJJ-NUHJPDEHSA-N
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* common name:
 
* common name:
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** nicotine-1'-N-oxide
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** GDP-mannose 4,6-dehydratase
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* molecular weight:
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* ec number:
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** 178.233   
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** [http://enzyme.expasy.org/EC/4.2.1.47 EC-4.2.1.47]
 
* Synonym(s):
 
* Synonym(s):
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** nicotine N'-oxide
 
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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== Reaction(s) known to produce the compound ==
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* With identifiers:
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* [[RXN66-81]]
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** 1 [[GDP-MANNOSE]][c] '''=>''' 1 [[GDP-4-DEHYDRO-6-DEOXY-D-MANNOSE]][c] '''+''' 1 [[WATER]][c]
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== Reaction(s) of unknown directionality ==
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* With common name(s):
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** 1 GDP-α-D-mannose[c] '''=>''' 1 GDP-4-dehydro-6-deoxy-α-D-mannose[c] '''+''' 1 H2O[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Ec-28_003400]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: GO-TERM
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** Source: [[orthology-aragem]]
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* Gene: [[Ec-11_005510]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: GO-TERM
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** Source: [[orthology-aragem]]
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== Pathways  ==
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* [[GDPRHAMSYN-PWY]], GDP-D-rhamnose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=GDPRHAMSYN-PWY GDPRHAMSYN-PWY]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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* [[PWY-7573]], GDP-mycosamine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7573 PWY-7573]
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** '''1''' reactions found over '''3''' reactions in the full pathway
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* [[PWY-5740]], GDP-L-colitose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5740 PWY-5740]
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** '''1''' reactions found over '''5''' reactions in the full pathway
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* [[PWY-66]], GDP-L-fucose biosynthesis I (from GDP-D-mannose): [http://metacyc.org/META/NEW-IMAGE?object=PWY-66 PWY-66]
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** '''2''' reactions found over '''2''' reactions in the full pathway
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* [[PWY-5738]], GDP-6-deoxy-D-talose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5738 PWY-5738]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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* [[PWY-5739]], GDP-D-perosamine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5739 PWY-5739]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-aragem]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* PUBCHEM:
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* RHEA:
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=68107 68107]
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23820 23820]
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* CHEMSPIDER:
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* LIGAND-RXN:
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** [http://www.chemspider.com/Chemical-Structure.61415.html 61415]
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** [http://www.genome.jp/dbget-bin/www_bget?R00888 R00888]
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* HMDB : HMDB01497
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* UNIPROT:
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{{#set: smiles=C1(CC[CH](N(=O)(C)1)C2(=CN=CC=C2))}}
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** [http://www.uniprot.org/uniprot/Q84439 Q84439]
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{{#set: inchi key=InChIKey=RWFBQHICRCUQJJ-NUHJPDEHSA-N}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=nicotine-1'-N-oxide}}
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{{#set: common name=GDP-mannose 4,6-dehydratase}}
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{{#set: molecular weight=178.233    }}
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{{#set: ec number=EC-4.2.1.47}}
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{{#set: common name=nicotine N'-oxide}}
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{{#set: gene associated=Ec-28_003400|Ec-11_005510}}
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{{#set: produced by=RXN66-81}}
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{{#set: in pathway=GDPRHAMSYN-PWY|PWY-7573|PWY-5740|PWY-66|PWY-5738|PWY-5739}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 20:38, 21 March 2018

Reaction GDPMANDEHYDRA-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • GDP-mannose 4,6-dehydratase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • GDPRHAMSYN-PWY, GDP-D-rhamnose biosynthesis: GDPRHAMSYN-PWY
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-7573, GDP-mycosamine biosynthesis: PWY-7573
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-5740, GDP-L-colitose biosynthesis: PWY-5740
    • 1 reactions found over 5 reactions in the full pathway
  • PWY-66, GDP-L-fucose biosynthesis I (from GDP-D-mannose): PWY-66
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-5738, GDP-6-deoxy-D-talose biosynthesis: PWY-5738
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-5739, GDP-D-perosamine biosynthesis: PWY-5739
    • 1 reactions found over 2 reactions in the full pathway

Reconstruction information

External links





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