Difference between revisions of "GDPMANDEHYDRA-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14177 RXN-14177] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GDPMANDEHYDRA-RXN GDPMANDEHYDRA-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** GDP-mannose...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14177 RXN-14177] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GDPMANDEHYDRA-RXN GDPMANDEHYDRA-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 +
* common name:
 +
** GDP-mannose 4,6-dehydratase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.1.1.163 EC-2.1.1.163]
+
** [http://enzyme.expasy.org/EC/4.2.1.47 EC-4.2.1.47]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[S-ADENOSYLMETHIONINE]][c] '''+''' 1 [[CPD-15152]][c] '''=>''' 1 [[CPD-15153]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[ADENOSYL-HOMO-CYS]][c]
+
** 1 [[GDP-MANNOSE]][c] '''=>''' 1 [[GDP-4-DEHYDRO-6-DEOXY-D-MANNOSE]][c] '''+''' 1 [[WATER]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 S-adenosyl-L-methionine[c] '''+''' 1 6-methoxy-2-all-trans-octaprenyl-1,4-benzoquinone[c] '''=>''' 1 3-methyl-6-methoxy-2-octaprenyl-1,4-benzoquinone[c] '''+''' 1 H+[c] '''+''' 1 S-adenosyl-L-homocysteine[c]
+
** 1 GDP-α-D-mannose[c] '''=>''' 1 GDP-4-dehydro-6-deoxy-α-D-mannose[c] '''+''' 1 H2O[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Ec-16_000550]]
+
* Gene: [[Ec-28_003400]]
−
** [[pantograph]]-[[aragem]]
+
** Source: [[annotation-esiliculosus_genome]]
−
* [[Ec-17_000350]]
+
*** Assignment: GO-TERM
−
** [[pantograph]]-[[aragem]]
+
** Source: [[orthology-aragem]]
−
* [[Ec-06_002620]]
+
* Gene: [[Ec-11_005510]]
−
** [[pantograph]]-[[aragem]]
+
** Source: [[annotation-esiliculosus_genome]]
−
* [[Ec-08_006620]]
+
*** Assignment: GO-TERM
−
** [[pantograph]]-[[aragem]]
+
** Source: [[orthology-aragem]]
−
* [[Ec-27_005280]]
+
−
** [[pantograph]]-[[aragem]]
+
−
* [[Ec-09_002660]]
+
−
** [[pantograph]]-[[aragem]]
+
−
* [[Ec-27_000650]]
+
−
** [[pantograph]]-[[aragem]]
+
 
== Pathways  ==
 
== Pathways  ==
 +
* [[GDPRHAMSYN-PWY]], GDP-D-rhamnose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=GDPRHAMSYN-PWY GDPRHAMSYN-PWY]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-7573]], GDP-mycosamine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7573 PWY-7573]
 +
** '''1''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-5740]], GDP-L-colitose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5740 PWY-5740]
 +
** '''1''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-66]], GDP-L-fucose biosynthesis I (from GDP-D-mannose): [http://metacyc.org/META/NEW-IMAGE?object=PWY-66 PWY-66]
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-5738]], GDP-6-deoxy-D-talose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5738 PWY-5738]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-5739]], GDP-D-perosamine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5739 PWY-5739]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-aragem]]
−
*** [[aragem]]
+
*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=26465 26465]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23820 23820]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R00888 R00888]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/Q84439 Q84439]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: ec number=EC-2.1.1.163}}
+
{{#set: common name=GDP-mannose 4,6-dehydratase}}
−
{{#set: gene associated=Ec-16_000550|Ec-17_000350|Ec-06_002620|Ec-08_006620|Ec-27_005280|Ec-09_002660|Ec-27_000650}}
+
{{#set: ec number=EC-4.2.1.47}}
−
{{#set: in pathway=}}
+
{{#set: gene associated=Ec-28_003400|Ec-11_005510}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: in pathway=GDPRHAMSYN-PWY|PWY-7573|PWY-5740|PWY-66|PWY-5738|PWY-5739}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction source=aragem}}
+
{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 20:38, 21 March 2018

Reaction GDPMANDEHYDRA-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • GDP-mannose 4,6-dehydratase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • GDPRHAMSYN-PWY, GDP-D-rhamnose biosynthesis: GDPRHAMSYN-PWY
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-7573, GDP-mycosamine biosynthesis: PWY-7573
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-5740, GDP-L-colitose biosynthesis: PWY-5740
    • 1 reactions found over 5 reactions in the full pathway
  • PWY-66, GDP-L-fucose biosynthesis I (from GDP-D-mannose): PWY-66
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-5738, GDP-6-deoxy-D-talose biosynthesis: PWY-5738
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-5739, GDP-D-perosamine biosynthesis: PWY-5739
    • 1 reactions found over 2 reactions in the full pathway

Reconstruction information

External links





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