Difference between revisions of "ISOCIT-CLEAV-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=NARINGENIN-CHALCONE-SYNTHASE-RXN NARINGENIN-CHALCONE-SYNTHASE-RXN] == * direction: ** LEFT-TO-RIGHT...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ISOCIT-CLEAV-RXN ISOCIT-CLEAV-RXN] == * direction: ** REVERSIBLE * common name: ** isocitrate lyase...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=NARINGENIN-CHALCONE-SYNTHASE-RXN NARINGENIN-CHALCONE-SYNTHASE-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ISOCIT-CLEAV-RXN ISOCIT-CLEAV-RXN] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 +
* common name:
 +
** isocitrate lyase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.3.1.74 EC-2.3.1.74]
+
** [http://enzyme.expasy.org/EC/4.1.3.1 EC-4.1.3.1]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 3 [[PROTON]][c] '''+''' 1 [[P-COUMAROYL-COA]][c] '''+''' 3 [[MALONYL-COA]][c] '''=>''' 1 [[APIGENIN]][c] '''+''' 3 [[CARBON-DIOXIDE]][c] '''+''' 4 [[CO-A]][c]
+
** 1 [[THREO-DS-ISO-CITRATE]][c] '''<=>''' 1 [[SUC]][c] '''+''' 1 [[GLYOX]][c]
 
* With common name(s):
 
* With common name(s):
−
** 3 H+[c] '''+''' 1 4-coumaroyl-CoA[c] '''+''' 3 malonyl-CoA[c] '''=>''' 1 2',4,4',6'-tetrahydroxychalcone[c] '''+''' 3 CO2[c] '''+''' 4 coenzyme A[c]
+
** 1 D-threo-isocitrate[c] '''<=>''' 1 succinate[c] '''+''' 1 glyoxylate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Ec-02_004580]]
+
* Gene: [[Ec-12_007550]]
−
** [[pantograph]]-[[aragem]]
+
** Source: [[annotation-esiliculosus_genome]]
−
* [[Ec-07_003670]]
+
*** Assignment: GO-TERM
−
** [[pantograph]]-[[aragem]]
+
−
* [[Ec-07_006660]]
+
−
** [[pantograph]]-[[aragem]]
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-6316]], aromatic polyketides biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6316 PWY-6316]
+
* [[P105-PWY]], TCA cycle IV (2-oxoglutarate decarboxylase): [http://metacyc.org/META/NEW-IMAGE?object=P105-PWY P105-PWY]
−
** '''1''' reactions found over '''2''' reactions in the full pathway
+
** '''9''' reactions found over '''11''' reactions in the full pathway
−
* [[PWY-7397]], naringenin biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7397 PWY-7397]
+
* [[GLYOXYLATE-BYPASS]], glyoxylate cycle: [http://metacyc.org/META/NEW-IMAGE?object=GLYOXYLATE-BYPASS GLYOXYLATE-BYPASS]
−
** '''3''' reactions found over '''4''' reactions in the full pathway
+
** '''6''' reactions found over '''6''' reactions in the full pathway
−
* [[PWY1F-FLAVSYN]], flavonoid biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY1F-FLAVSYN PWY1F-FLAVSYN]
+
* [[PWY-6969]], TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6969 PWY-6969]
−
** '''5''' reactions found over '''5''' reactions in the full pathway
+
** '''10''' reactions found over '''12''' reactions in the full pathway
−
* [[PWY-5135]], xanthohumol biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5135 PWY-5135]
+
−
** '''2''' reactions found over '''4''' reactions in the full pathway
+
−
* [[PWY-6787]], flavonoid biosynthesis (in equisetum): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6787 PWY-6787]
+
−
** '''6''' reactions found over '''10''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[annotation]]
−
** [[pantograph]]:
+
** Source: [[annotation-esiliculosus_genome]]
−
*** [[aragem]]
+
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11128 11128]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13245 13245]
 +
* PIR:
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A41338 A41338]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=I40713 I40713]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JA0155 JA0155]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JC6182 JC6182]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S26857 S26857]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S26858 S26858]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S39953 S39953]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S52819 S52819]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S77654 S77654]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T04115 T04115]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T06353 T06353]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T07631 T07631]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T07632 T07632]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T08046 T08046]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T09774 T09774]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T09779 T09779]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T11209 T11209]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=WZBYI WZBYI]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=WZCKI WZCKI]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=WZCNIU WZCNIU]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=WZCSI WZCSI]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=WZECIC WZECIC]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=WZRPI WZRPI]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01613 R01613]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00479 R00479]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/Q43188 Q43188]
+
** [http://www.uniprot.org/uniprot/P28467 P28467]
−
** [http://www.uniprot.org/uniprot/O04934 O04934]
+
** [http://www.uniprot.org/uniprot/P42449 P42449]
−
** [http://www.uniprot.org/uniprot/P17957 P17957]
+
** [http://www.uniprot.org/uniprot/P20699 P20699]
−
** [http://www.uniprot.org/uniprot/P30081 P30081]
+
** [http://www.uniprot.org/uniprot/O13439 O13439]
−
** [http://www.uniprot.org/uniprot/P30080 P30080]
+
** [http://www.uniprot.org/uniprot/P28299 P28299]
−
** [http://www.uniprot.org/uniprot/Q9S9C0 Q9S9C0]
+
** [http://www.uniprot.org/uniprot/Q12031 Q12031]
−
** [http://www.uniprot.org/uniprot/Q9S9B9 Q9S9B9]
+
** [http://www.uniprot.org/uniprot/P46831 P46831]
−
** [http://www.uniprot.org/uniprot/P23419 P23419]
+
** [http://www.uniprot.org/uniprot/O24588 O24588]
−
** [http://www.uniprot.org/uniprot/P26018 P26018]
+
** [http://www.uniprot.org/uniprot/P49297 P49297]
−
** [http://www.uniprot.org/uniprot/P22928 P22928]
+
** [http://www.uniprot.org/uniprot/P45456 P45456]
−
** [http://www.uniprot.org/uniprot/P30079 P30079]
+
** [http://www.uniprot.org/uniprot/P45457 P45457]
−
** [http://www.uniprot.org/uniprot/Q01287 Q01287]
+
** [http://www.uniprot.org/uniprot/Q39577 Q39577]
−
** [http://www.uniprot.org/uniprot/Q01288 Q01288]
+
** [http://www.uniprot.org/uniprot/Q41084 Q41084]
−
** [http://www.uniprot.org/uniprot/P51078 P51078]
+
** [http://www.uniprot.org/uniprot/Q43097 Q43097]
−
** [http://www.uniprot.org/uniprot/P51080 P51080]
+
** [http://www.uniprot.org/uniprot/P28240 P28240]
−
** [http://www.uniprot.org/uniprot/P30078 P30078]
+
** [http://www.uniprot.org/uniprot/P20014 P20014]
−
** [http://www.uniprot.org/uniprot/Q01286 Q01286]
+
** [http://www.uniprot.org/uniprot/P17069 P17069]
−
** [http://www.uniprot.org/uniprot/P30073 P30073]
+
** [http://www.uniprot.org/uniprot/P15479 P15479]
−
** [http://www.uniprot.org/uniprot/P30074 P30074]
+
** [http://www.uniprot.org/uniprot/P0A9G6 P0A9G6]
−
** [http://www.uniprot.org/uniprot/P30076 P30076]
+
** [http://www.uniprot.org/uniprot/P25248 P25248]
−
** [http://www.uniprot.org/uniprot/P30077 P30077]
+
{{#set: direction=REVERSIBLE}}
−
** [http://www.uniprot.org/uniprot/P51089 P51089]
+
{{#set: common name=isocitrate lyase}}
−
** [http://www.uniprot.org/uniprot/P51075 P51075]
+
{{#set: ec number=EC-4.1.3.1}}
−
** [http://www.uniprot.org/uniprot/P16107 P16107]
+
{{#set: gene associated=Ec-12_007550}}
−
** [http://www.uniprot.org/uniprot/P51077 P51077]
+
{{#set: in pathway=P105-PWY|GLYOXYLATE-BYPASS|PWY-6969}}
−
** [http://www.uniprot.org/uniprot/P51079 P51079]
+
{{#set: reconstruction category=annotation}}
−
** [http://www.uniprot.org/uniprot/P30075 P30075]
+
{{#set: reconstruction source=annotation-esiliculosus_genome}}
−
** [http://www.uniprot.org/uniprot/P51081 P51081]
+
{{#set: reconstruction tool=pathwaytools}}
−
** [http://www.uniprot.org/uniprot/P51082 P51082]
+
−
** [http://www.uniprot.org/uniprot/P48390 P48390]
+
−
** [http://www.uniprot.org/uniprot/P48405 P48405]
+
−
** [http://www.uniprot.org/uniprot/P48406 P48406]
+
−
** [http://www.uniprot.org/uniprot/P23569 P23569]
+
−
** [http://www.uniprot.org/uniprot/P13416 P13416]
+
−
** [http://www.uniprot.org/uniprot/P13417 P13417]
+
−
** [http://www.uniprot.org/uniprot/P17818 P17818]
+
−
** [http://www.uniprot.org/uniprot/P13114 P13114]
+
−
** [http://www.uniprot.org/uniprot/P08894 P08894]
+
−
** [http://www.uniprot.org/uniprot/P22924 P22924]
+
−
** [http://www.uniprot.org/uniprot/P22925 P22925]
+
−
** [http://www.uniprot.org/uniprot/P22926 P22926]
+
−
** [http://www.uniprot.org/uniprot/P22927 P22927]
+
−
** [http://www.uniprot.org/uniprot/P06515 P06515]
+
−
** [http://www.uniprot.org/uniprot/P24826 P24826]
+
−
** [http://www.uniprot.org/uniprot/P19168 P19168]
+
−
** [http://www.uniprot.org/uniprot/P24825 P24825]
+
−
** [http://www.uniprot.org/uniprot/P24824 P24824]
+
−
** [http://www.uniprot.org/uniprot/Q40005 Q40005]
+
−
** [http://www.uniprot.org/uniprot/Q96562 Q96562]
+
−
** [http://www.uniprot.org/uniprot/O22047 O22047]
+
−
** [http://www.uniprot.org/uniprot/O04971 O04971]
+
−
** [http://www.uniprot.org/uniprot/P48389 P48389]
+
−
** [http://www.uniprot.org/uniprot/P48398 P48398]
+
−
** [http://www.uniprot.org/uniprot/P48399 P48399]
+
−
** [http://www.uniprot.org/uniprot/Q96568 Q96568]
+
−
** [http://www.uniprot.org/uniprot/P48397 P48397]
+
−
** [http://www.uniprot.org/uniprot/O04966 O04966]
+
−
** [http://www.uniprot.org/uniprot/O04967 O04967]
+
−
** [http://www.uniprot.org/uniprot/O04968 O04968]
+
−
** [http://www.uniprot.org/uniprot/O04969 O04969]
+
−
** [http://www.uniprot.org/uniprot/O04970 O04970]
+
−
** [http://www.uniprot.org/uniprot/Q41292 Q41292]
+
−
{{#set: direction=LEFT-TO-RIGHT}}
+
−
{{#set: ec number=EC-2.3.1.74}}
+
−
{{#set: gene associated=Ec-02_004580|Ec-07_003670|Ec-07_006660}}
+
−
{{#set: in pathway=PWY-6316|PWY-7397|PWY1F-FLAVSYN|PWY-5135|PWY-6787}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=aragem}}
+

Latest revision as of 20:38, 21 March 2018

Reaction ISOCIT-CLEAV-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • isocitrate lyase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 D-threo-isocitrate[c] <=> 1 succinate[c] + 1 glyoxylate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • P105-PWY, TCA cycle IV (2-oxoglutarate decarboxylase): P105-PWY
    • 9 reactions found over 11 reactions in the full pathway
  • GLYOXYLATE-BYPASS, glyoxylate cycle: GLYOXYLATE-BYPASS
    • 6 reactions found over 6 reactions in the full pathway
  • PWY-6969, TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase): PWY-6969
    • 10 reactions found over 12 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=ISOCIT-CLEAV-RXN&oldid=28339"