Difference between revisions of "RXN-7913"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DUTP-PYROP-RXN DUTP-PYROP-RXN] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expa...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7913 RXN-7913] == * direction: ** LEFT-TO-RIGHT * common name: ** Adenylate kinase/UMP-CMP kina...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DUTP-PYROP-RXN DUTP-PYROP-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7913 RXN-7913] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 +
* common name:
 +
** Adenylate kinase/UMP-CMP kinase
 +
** cytidylate kinase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/3.6.1.19 EC-3.6.1.19]
+
** [http://enzyme.expasy.org/EC/2.7.4.25 EC-2.7.4.25]
−
** [http://enzyme.expasy.org/EC/3.6.1.23 EC-3.6.1.23]
+
** [http://enzyme.expasy.org/EC/2.7.4.14 EC-2.7.4.14]
 +
** [http://enzyme.expasy.org/EC/2.7.4.13 EC-2.7.4.13]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[DUTP]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[DUMP]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[PROTON]][c]
+
** 1 [[DCMP]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[DCDP]][c] '''+''' 1 [[ADP]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 dUTP[c] '''+''' 1 H2O[c] '''=>''' 1 dUMP[c] '''+''' 1 diphosphate[c] '''+''' 1 H+[c]
+
** 1 dCMP[c] '''+''' 1 ATP[c] '''=>''' 1 dCDP[c] '''+''' 1 ADP[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Ec-13_002810]]
+
* Gene: [[Ec-14_004920]]
−
** [[pantograph]]-[[aragem]]
+
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Ec-16_005090]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Ec-06_003080]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
 +
** Source: [[orthology-aragem]]
 +
* Gene: [[Ec-07_003680]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-7206]], pyrimidine deoxyribonucleotides dephosphorylation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7206 PWY-7206]
+
* [[PWY-7197]], pyrimidine deoxyribonucleotide phosphorylation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7197 PWY-7197]
−
** '''1''' reactions found over '''3''' reactions in the full pathway
+
** '''4''' reactions found over '''4''' reactions in the full pathway
−
* [[PWY-7184]], pyrimidine deoxyribonucleotides de novo biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7184 PWY-7184]
+
−
** '''9''' reactions found over '''9''' reactions in the full pathway
+
−
* [[PWY-7187]], pyrimidine deoxyribonucleotides de novo biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7187 PWY-7187]
+
−
** '''6''' reactions found over '''7''' reactions in the full pathway
+
−
* [[PWY-6545]], pyrimidine deoxyribonucleotides de novo biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6545 PWY-6545]
+
−
** '''8''' reactions found over '''9''' reactions in the full pathway
+
−
* [[PWY0-166]], superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli): [http://metacyc.org/META/NEW-IMAGE?object=PWY0-166 PWY0-166]
+
−
** '''14''' reactions found over '''17''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-aragem]]
−
*** [[aragem]]
+
*** Tool: [[pantograph]]
−
* [[annotation]]:
+
* Category: [[annotation]]
−
** [[pathwaytools]]:
+
** Source: [[annotation-esiliculosus_genome]]
−
*** [[esiliculosus_genome]]
+
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10248 10248]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25094 25094]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R02100 R02100]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01665 R01665]
−
* UNIPROT:
+
−
** [http://www.uniprot.org/uniprot/Q89932 Q89932]
+
−
** [http://www.uniprot.org/uniprot/P33316 P33316]
+
−
** [http://www.uniprot.org/uniprot/O15923 O15923]
+
−
** [http://www.uniprot.org/uniprot/Q9PMK9 Q9PMK9]
+
−
** [http://www.uniprot.org/uniprot/Q9Z9C2 Q9Z9C2]
+
−
** [http://www.uniprot.org/uniprot/Q9JUW1 Q9JUW1]
+
−
** [http://www.uniprot.org/uniprot/P43792 P43792]
+
−
** [http://www.uniprot.org/uniprot/P32518 P32518]
+
−
** [http://www.uniprot.org/uniprot/P68635 P68635]
+
−
** [http://www.uniprot.org/uniprot/P68634 P68634]
+
−
** [http://www.uniprot.org/uniprot/Q76RE7 Q76RE7]
+
−
** [http://www.uniprot.org/uniprot/P03195 P03195]
+
−
** [http://www.uniprot.org/uniprot/Q89662 Q89662]
+
−
** [http://www.uniprot.org/uniprot/Q00030 Q00030]
+
−
** [http://www.uniprot.org/uniprot/P33317 P33317]
+
−
** [http://www.uniprot.org/uniprot/Q45920 Q45920]
+
−
** [http://www.uniprot.org/uniprot/P43058 P43058]
+
−
** [http://www.uniprot.org/uniprot/O80091 O80091]
+
−
** [http://www.uniprot.org/uniprot/O36404 O36404]
+
−
** [http://www.uniprot.org/uniprot/O41033 O41033]
+
−
** [http://www.uniprot.org/uniprot/Q9YML1 Q9YML1]
+
−
** [http://www.uniprot.org/uniprot/O39251 O39251]
+
−
** [http://www.uniprot.org/uniprot/O01934 O01934]
+
−
** [http://www.uniprot.org/uniprot/P10234 P10234]
+
−
** [http://www.uniprot.org/uniprot/P06968 P06968]
+
−
** [http://www.uniprot.org/uniprot/P09254 P09254]
+
−
** [http://www.uniprot.org/uniprot/P28892 P28892]
+
−
** [http://www.uniprot.org/uniprot/P28893 P28893]
+
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: ec number=EC-3.6.1.19}}
+
{{#set: common name=Adenylate kinase/UMP-CMP kinase}}
−
{{#set: ec number=EC-3.6.1.23}}
+
{{#set: common name=cytidylate kinase}}
−
{{#set: gene associated=Ec-13_002810}}
+
{{#set: ec number=EC-2.7.4.25}}
−
{{#set: in pathway=PWY-7206|PWY-7184|PWY-7187|PWY-6545|PWY0-166}}
+
{{#set: ec number=EC-2.7.4.14}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: ec number=EC-2.7.4.13}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: gene associated=Ec-14_004920|Ec-16_005090|Ec-06_003080|Ec-07_003680}}
−
{{#set: reconstruction source=aragem}}
+
{{#set: in pathway=PWY-7197}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
−
{{#set: reconstruction source=esiliculosus_genome}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 19:38, 21 March 2018

Reaction RXN-7913

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 dCMP[c] + 1 ATP[c] => 1 dCDP[c] + 1 ADP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7197, pyrimidine deoxyribonucleotide phosphorylation: PWY-7197
    • 4 reactions found over 4 reactions in the full pathway

Reconstruction information

External links






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