Difference between revisions of "RXN-1744"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXNARA-8002 RXNARA-8002] == * direction: ** LEFT-TO-RIGHT * common name: ** Phytoene synthase; chlo...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-1744 RXN-1744] == * direction: ** REVERSIBLE * Synonym(s): == Reaction Formula == * With ident...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXNARA-8002 RXNARA-8002] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-1744 RXN-1744] ==
 
* direction:
 
* direction:
** LEFT-TO-RIGHT
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** REVERSIBLE
* common name:
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** Phytoene synthase; chloroplast precursor
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* Synonym(s):
 
* Synonym(s):
** prephytoene-diphosphate synthase
 
** PSase
 
** geranylgeranyl-diphosphate geranylgeranyltransferase
 
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
** 1 [[CPD-464]][c] '''=>''' 1 [[CPD-12321]][c] '''+''' 1 [[PPI]][c]
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** 1 [[PROTON]][c] '''+''' 6 [[GLYCOLLATE]][c] '''<=>''' 4 [[WATER]][c] '''+''' 1 [[ACET]][c] '''+''' 2 [[CARBON-DIOXIDE]][c] '''+''' 2 [[SUC]][c]
 
* With common name(s):
 
* With common name(s):
** 1 prephytoene diphosphate[c] '''=>''' 1 15-cis-phytoene[c] '''+''' 1 diphosphate[c]
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** 1 H+[c] '''+''' 6 glycolate[c] '''<=>''' 4 H2O[c] '''+''' 1 acetate[c] '''+''' 2 CO2[c] '''+''' 2 succinate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
Genes have been associated with this reaction based on different elements listed below.
 
* [[Ec-04_002810]]
 
** ESILICULOSUS_GENOME
 
***EC-NUMBER
 
 
== Pathways  ==
 
== Pathways  ==
* [[PWY-6287]], neurosporene biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6287 PWY-6287]
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* [[PWY-804]], glycolate degradation II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-804 PWY-804]
** '''2''' reactions found over '''5''' reactions in the full pathway
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** '''1''' reactions found over '''1''' reactions in the full pathway
* [[PWY-5942]], trans-lycopene biosynthesis I (bacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5942 PWY-5942]
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** '''2''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-6475]], trans-lycopene biosynthesis II (plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6475 PWY-6475]
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** '''4''' reactions found over '''8''' reactions in the full pathway
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== Reconstruction information  ==
 
== Reconstruction information  ==
* Category: [[annotation]]
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* Category: [[gap-filling]]
** Source: [[annotation-esiliculosus_genome]]
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** Source: [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
*** Tool: [[pathwaytools]]
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*** Tool: [[meneco]]
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**** Comment: [[added for gapfilling]]
 
== External links  ==
 
== External links  ==
* LIGAND-RXN:
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{{#set: direction=REVERSIBLE}}
** [http://www.genome.jp/dbget-bin/www_bget?R07270 R07270]
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{{#set: in pathway=PWY-804}}
{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: reconstruction category=gap-filling}}
{{#set: common name=Phytoene synthase; chloroplast precursor}}
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{{#set: reconstruction source=gap-filling-gapfilling_solution_with_meneco_draft_medium}}
{{#set: common name=prephytoene-diphosphate synthase|PSase|geranylgeranyl-diphosphate geranylgeranyltransferase}}
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{{#set: reconstruction tool=meneco}}
{{#set: gene associated=Ec-04_002810}}
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{{#set: reconstruction comment=added for gapfilling}}
{{#set: in pathway=PWY-6287|PWY-5942|PWY-6475}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome}}
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{{#set: reconstruction tool=pathwaytools}}
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Latest revision as of 19:39, 21 March 2018

Reaction RXN-1744

  • direction:
    • REVERSIBLE
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 H+[c] + 6 glycolate[c] <=> 4 H2O[c] + 1 acetate[c] + 2 CO2[c] + 2 succinate[c]

Genes associated with this reaction

Pathways

  • PWY-804, glycolate degradation II: PWY-804
    • 1 reactions found over 1 reactions in the full pathway

Reconstruction information

External links