Difference between revisions of "Ec-11 003080"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=FARNESYLTRANSTRANSFERASE-RXN FARNESYLTRANSTRANSFERASE-RXN] == * direction: ** LEFT-TO-RIGHT * commo...")
 
(Created page with "Category:Gene == Gene Ec-11_003080 == * left end position: ** 3222076 * transcription direction: ** POSITIVE * right end position: ** 3236973 * centisome position: ** 51.2...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=FARNESYLTRANSTRANSFERASE-RXN FARNESYLTRANSTRANSFERASE-RXN] ==
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== Gene Ec-11_003080 ==
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* direction:
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* left end position:
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** LEFT-TO-RIGHT
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** 3222076
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* common name:
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* transcription direction:
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** Geranylgeranyl pyrophosphate synthetase, chloroplast precursor;
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** POSITIVE
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** geranylgeranyl pyrophosphate synthase, chloroplast precursor
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* right end position:
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* ec number:
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** 3236973
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** [http://enzyme.expasy.org/EC/2.5.1.29 EC-2.5.1.29]
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* centisome position:
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** 51.22816   
 
* Synonym(s):
 
* Synonym(s):
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** Esi_0048_0101
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** Esi0048_0101
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[ISOCITDEH-RXN]]
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** 1 [[DELTA3-ISOPENTENYL-PP]][c] '''+''' 1 [[FARNESYL-PP]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[GERANYLGERANYL-PP]][c]
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** Source: [[annotation-esiliculosus_genome]]
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* With common name(s):
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*** Assignment: go-term
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** 1 isopentenyl diphosphate[c] '''+''' 1 (2E,6E)-farnesyl diphosphate[c] '''=>''' 1 diphosphate[c] '''+''' 1 geranylgeranyl diphosphate[c]
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* Reaction: [[RXN-8642]]
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** Source: [[annotation-esiliculosus_genome]]
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== Genes associated with this reaction  ==
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*** Assignment: go-term
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Genes have been associated with this reaction based on different elements listed below.
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* Reaction: [[RXN-9951]]
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* [[Ec-16_004320]]
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** Source: [[annotation-esiliculosus_genome]]
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** ESILICULOSUS_GENOME
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*** Assignment: go-term
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***EC-NUMBER
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== Pathways associated ==
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* [[Ec-16_004330]]
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* [[PWY-5913]]
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** ESILICULOSUS_GENOME
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* [[REDCITCYC]]
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***EC-NUMBER
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* [[PWY-7268]]
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** [[pantograph]]-[[aragem]]
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* [[P23-PWY]]
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== Pathways  ==
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* [[P105-PWY]]
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* [[PWY-7736]], stellatic acid biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7736 PWY-7736]
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* [[PWY-6969]]
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** '''3''' reactions found over '''8''' reactions in the full pathway
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* [[FERMENTATION-PWY]]
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* [[PWY-7492]], paspaline biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7492 PWY-7492]
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* [[PWY-6728]]
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** '''1''' reactions found over '''6''' reactions in the full pathway
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* [[PWY-6549]]
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* [[PWY-6659]], fusicoccin A biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6659 PWY-6659]
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* [[PWY-7254]]
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** '''1''' reactions found over '''8''' reactions in the full pathway
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* [[PWY-7124]]
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* [[PWY-6691]], plaunotol biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6691 PWY-6691]
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* [[TCA]]
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** '''1''' reactions found over '''3''' reactions in the full pathway
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* [[PWY-5120]], geranylgeranyl diphosphate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5120 PWY-5120]
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** '''1''' reactions found over '''1''' reactions in the full pathway
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* [[PWY-7720]], ophiobolin F biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7720 PWY-7720]
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** '''1''' reactions found over '''3''' reactions in the full pathway
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* [[PWY-7721]], methyl phomopsenoate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7721 PWY-7721]
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** '''2''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-7517]], brassicicene C biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7517 PWY-7517]
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** '''1''' reactions found over '''7''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[aragem]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[esiliculosus_genome]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: left end position=3222076}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17653 17653]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: right end position=3236973}}
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** [http://www.genome.jp/dbget-bin/www_bget?R02061 R02061]
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{{#set: centisome position=51.22816    }}
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* UNIPROT:
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{{#set: common name=Esi_0048_0101|Esi0048_0101}}
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** [http://www.uniprot.org/uniprot/P39464 P39464]
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{{#set: reaction associated=ISOCITDEH-RXN|RXN-8642|RXN-9951}}
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** [http://www.uniprot.org/uniprot/P24322 P24322]
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{{#set: pathway associated=PWY-5913|REDCITCYC|PWY-7268|P23-PWY|P105-PWY|PWY-6969|FERMENTATION-PWY|PWY-6728|PWY-6549|PWY-7254|PWY-7124|TCA}}
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** [http://www.uniprot.org/uniprot/P80042 P80042]
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** [http://www.uniprot.org/uniprot/Q12051 Q12051]
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** [http://www.uniprot.org/uniprot/P95999 P95999]
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** [http://www.uniprot.org/uniprot/P48368 P48368]
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** [http://www.uniprot.org/uniprot/P93227 P93227]
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** [http://www.uniprot.org/uniprot/P93228 P93228]
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** [http://www.uniprot.org/uniprot/Q42698 Q42698]
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** [http://www.uniprot.org/uniprot/Q43133 Q43133]
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** [http://www.uniprot.org/uniprot/Q42866 Q42866]
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** [http://www.uniprot.org/uniprot/P54976 P54976]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=Geranylgeranyl pyrophosphate synthetase, chloroplast precursor;}}
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{{#set: common name=geranylgeranyl pyrophosphate synthase, chloroplast precursor}}
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{{#set: ec number=EC-2.5.1.29}}
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{{#set: gene associated=Ec-16_004320|Ec-16_004330}}
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{{#set: in pathway=PWY-7736|PWY-7492|PWY-6659|PWY-6691|PWY-5120|PWY-7720|PWY-7721|PWY-7517}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=aragem}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=esiliculosus_genome}}
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Latest revision as of 20:39, 21 March 2018

Gene Ec-11_003080

  • left end position:
    • 3222076
  • transcription direction:
    • POSITIVE
  • right end position:
    • 3236973
  • centisome position:
    • 51.22816
  • Synonym(s):
    • Esi_0048_0101
    • Esi0048_0101

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=Ec-11_003080&oldid=28446"