Difference between revisions of "OXALODECARB-RXN"

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(Created page with "Category:Gene == Gene Ec-22_003320 == * left end position: ** 3786298 * transcription direction: ** POSITIVE * right end position: ** 3813925 * centisome position: ** 83.8...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=OXALODECARB-RXN OXALODECARB-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** malate dehydrog...")
 
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Ec-22_003320 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=OXALODECARB-RXN OXALODECARB-RXN] ==
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* left end position:
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* direction:
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** 3786298
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** LEFT-TO-RIGHT
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* transcription direction:
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* common name:
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** POSITIVE
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** malate dehydrogenase (decarboxylating) (NAD+)
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* right end position:
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* ec number:
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** 3813925
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** [http://enzyme.expasy.org/EC/1.1.1.38 EC-1.1.1.38]
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* centisome position:
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** [http://enzyme.expasy.org/EC/4.1.1.3 EC-4.1.1.3]
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** 83.84462   
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* Synonym(s):
 
* Synonym(s):
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** Esi_0039_0126
 
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** Esi0039_0126
 
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** TPS
 
  
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== Reactions associated ==
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== Reaction Formula ==
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* [[RXN1G-1435]]
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* With identifiers:
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** esiliculosus_genome
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** 1 [[PROTON]][c] '''+''' 1 [[OXALACETIC_ACID]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[PYRUVATE]][c]
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***automated-name-match
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* With common name(s):
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* [[RXN1G-1436]]
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** 1 H+[c] '''+''' 1 oxaloacetate[c] '''=>''' 1 CO2[c] '''+''' 1 pyruvate[c]
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** esiliculosus_genome
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***automated-name-match
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== Genes associated with this reaction  ==
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* [[RXN1G-1437]]
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Genes have been associated with this reaction based on different elements listed below.
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** esiliculosus_genome
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* Gene: [[Ec-07_002070]]
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***automated-name-match
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** Source: [[annotation-esiliculosus_genome]]
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* [[RXN1G-1438]]
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*** Assignment: GO-TERM
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** esiliculosus_genome
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* Gene: [[Ec-01_003680]]
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***automated-name-match
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** Source: [[annotation-esiliculosus_genome]]
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* [[RXN1G-1439]]
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*** Assignment: GO-TERM
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** esiliculosus_genome
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* Gene: [[Ec-07_002060]]
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***automated-name-match
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** Source: [[annotation-esiliculosus_genome]]
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* [[TREHALOSE6PSYN-RXN]]
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*** Assignment: GO-TERM
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** esiliculosus_genome
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== Pathways  ==
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***ec-number
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* [[METHYLGALLATE-DEGRADATION-PWY]], methylgallate degradation: [http://metacyc.org/META/NEW-IMAGE?object=METHYLGALLATE-DEGRADATION-PWY METHYLGALLATE-DEGRADATION-PWY]
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* [[TREHALOSEPHOSPHA-RXN]]
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** '''1''' reactions found over '''6''' reactions in the full pathway
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** esiliculosus_genome
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* [[PWY-6339]], syringate degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6339 PWY-6339]
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***automated-name-match
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** '''1''' reactions found over '''11''' reactions in the full pathway
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== Pathways associated ==
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* [[P184-PWY]], protocatechuate degradation I (meta-cleavage pathway): [http://metacyc.org/META/NEW-IMAGE?object=P184-PWY P184-PWY]
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* [[TREHALOSESYN-PWY]]
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** '''1''' reactions found over '''8''' reactions in the full pathway
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* [[PWYG-321]]
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== Reconstruction information  ==
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* [[PWY-881]]
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* Category: [[annotation]]
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* [[TRESYN-PWY]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: left end position=3786298}}
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* RHEA:
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{{#set: transcription direction=POSITIVE}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15641 15641]
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{{#set: right end position=3813925}}
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* LIGAND-RXN:
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{{#set: centisome position=83.84462    }}
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** [http://www.genome.jp/dbget-bin/www_bget?R00217 R00217]
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{{#set: common name=Esi_0039_0126|Esi0039_0126|TPS}}
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* UNIPROT:
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{{#set: reaction associated=RXN1G-1435|RXN1G-1436|RXN1G-1437|RXN1G-1438|RXN1G-1439|TREHALOSE6PSYN-RXN|TREHALOSEPHOSPHA-RXN}}
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** [http://www.uniprot.org/uniprot/P13187 P13187]
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{{#set: pathway associated=TREHALOSESYN-PWY|PWYG-321|PWY-881|TRESYN-PWY}}
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** [http://www.uniprot.org/uniprot/P13155 P13155]
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** [http://www.uniprot.org/uniprot/P13156 P13156]
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** [http://www.uniprot.org/uniprot/Q58628 Q58628]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=malate dehydrogenase (decarboxylating) (NAD+)}}
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{{#set: ec number=EC-1.1.1.38}}
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{{#set: ec number=EC-4.1.1.3}}
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{{#set: gene associated=Ec-07_002070|Ec-01_003680|Ec-07_002060}}
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{{#set: in pathway=METHYLGALLATE-DEGRADATION-PWY|PWY-6339|P184-PWY}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome}}
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{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 19:39, 21 March 2018

Reaction OXALODECARB-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • malate dehydrogenase (decarboxylating) (NAD+)
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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