Difference between revisions of "RXN-9533"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN66-470 RXN66-470] == * direction: ** LEFT-TO-RIGHT * common name: ** 3-methyl-branched fatty acy...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9533 RXN-9533] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/2....")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN66-470 RXN66-470] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9533 RXN-9533] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
−
* common name:
 
−
** 3-methyl-branched fatty acyl-CoA 2-hydroxylase
 
−
** Phytanoyl-CoA dioxygenase
 
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/1.14.11 EC-1.14.11]
+
** [http://enzyme.expasy.org/EC/2.3.1.86 EC-2.3.1.86]
 +
** [http://enzyme.expasy.org/EC/2.3.1.85 EC-2.3.1.85]
 +
** [http://enzyme.expasy.org/EC/4.2.1.59 EC-4.2.1.59]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[3-Methyl-Saturated-Fatty-Acyl-CoA]][c] '''+''' 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''=>''' 1 [[SUC]][c] '''+''' 1 [[2-OH-3-Methyl-Saturated-Fatty-Acyl-CoA]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
+
** 1 [[R-3-hydroxydodecanoyl-ACPs]][c] '''=>''' 1 [[Dodec-2-enoyl-ACPs]][c] '''+''' 1 [[WATER]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 a 3-methyl-branched 2,3,4-saturated fatty acyl-CoA[c] '''+''' 1 2-oxoglutarate[c] '''+''' 1 oxygen[c] '''=>''' 1 succinate[c] '''+''' 1 a 2-hydroxy-3-methyl-branched 2,3,4-saturated fatty acyl-CoA[c] '''+''' 1 CO2[c]
+
** 1 a (3R)-3-hydroxydodecanoyl-[acp][c] '''=>''' 1 a (2E)-dodec-2-enoyl-[acp][c] '''+''' 1 H2O[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
−
Genes have been associated with this reaction based on different elements listed below.
 
−
* [[Ec-22_003660]]
 
−
** ESILICULOSUS_GENOME
 
−
***AUTOMATED-NAME-MATCH
 
−
* [[Ec-01_011990]]
 
−
** ESILICULOSUS_GENOME
 
−
***AUTOMATED-NAME-MATCH
 
−
* [[Ec-01_001740]]
 
−
** ESILICULOSUS_GENOME
 
−
***AUTOMATED-NAME-MATCH
 
−
* [[Ec-23_003040]]
 
−
** ESILICULOSUS_GENOME
 
−
***AUTOMATED-NAME-MATCH
 
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY66-387]], fatty acid α-oxidation II: [http://metacyc.org/META/NEW-IMAGE?object=PWY66-387 PWY66-387]
+
* [[PWY-7664]], oleate biosynthesis IV (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7664 PWY-7664]
−
** '''4''' reactions found over '''6''' reactions in the full pathway
+
** '''10''' reactions found over '''14''' reactions in the full pathway
 +
* [[PWY-5971]], palmitate biosynthesis II (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5971 PWY-5971]
 +
** '''28''' reactions found over '''31''' reactions in the full pathway
 +
* [[PWY-5994]], palmitate biosynthesis I (animals and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5994 PWY-5994]
 +
** '''20''' reactions found over '''31''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[annotation]]:
+
* Category: [[gap-filling]]
−
** [[pathwaytools]]:
+
** Source: [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
−
*** [[esiliculosus_genome]]
+
*** Tool: [[meneco]]
 +
**** Comment: [[added for gapfilling]]
 
== External links  ==
 
== External links  ==
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=3-methyl-branched fatty acyl-CoA 2-hydroxylase}}
+
{{#set: ec number=EC-2.3.1.86}}
−
{{#set: common name=Phytanoyl-CoA dioxygenase}}
+
{{#set: ec number=EC-2.3.1.85}}
−
{{#set: ec number=EC-1.14.11}}
+
{{#set: ec number=EC-4.2.1.59}}
−
{{#set: gene associated=Ec-22_003660|Ec-01_011990|Ec-01_001740|Ec-23_003040}}
+
{{#set: in pathway=PWY-7664|PWY-5971|PWY-5994}}
−
{{#set: in pathway=PWY66-387}}
+
{{#set: reconstruction category=gap-filling}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction source=gap-filling-gapfilling_solution_with_meneco_draft_medium}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=meneco}}
−
{{#set: reconstruction source=esiliculosus_genome}}
+
{{#set: reconstruction comment=added for gapfilling}}

Latest revision as of 19:43, 21 March 2018

Reaction RXN-9533

Reaction Formula

Genes associated with this reaction

Pathways

  • PWY-7664, oleate biosynthesis IV (anaerobic): PWY-7664
    • 10 reactions found over 14 reactions in the full pathway
  • PWY-5971, palmitate biosynthesis II (bacteria and plants): PWY-5971
    • 28 reactions found over 31 reactions in the full pathway
  • PWY-5994, palmitate biosynthesis I (animals and fungi): PWY-5994
    • 20 reactions found over 31 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=RXN-9533&oldid=28893"