Difference between revisions of "Ec-19 003020"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=OROTPDECARB-RXN OROTPDECARB-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** Aldolase-type T...")
(Created page with "Category:Gene == Gene Ec-19_003020 == * left end position: ** 3296289 * transcription direction: ** POSITIVE * right end position: ** 3300091 * centisome position: ** 55.2...")
 
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=OROTPDECARB-RXN OROTPDECARB-RXN] ==
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== Gene Ec-19_003020 ==
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* direction:
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* left end position:
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** LEFT-TO-RIGHT
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** 3296289
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* common name:
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* transcription direction:
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** Aldolase-type TIM barrel
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** POSITIVE
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* ec number:
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* right end position:
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** [http://enzyme.expasy.org/EC/4.1.1.23 EC-4.1.1.23]
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** 3300091
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* centisome position:
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** 55.20786   
 
* Synonym(s):
 
* Synonym(s):
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** Esi_0035_0157
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** Esi0035_0157
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[GAPOXNPHOSPHN-RXN]]
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** 1 [[OROTIDINE-5-PHOSPHATE]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[UMP]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
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* With common name(s):
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** 1 orotidine 5'-phosphate[c] '''+''' 1 H+[c] '''=>''' 1 UMP[c] '''+''' 1 CO2[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Ec-23_000110]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-aragem]]
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== Pathways  ==
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* [[PWY-5686]], UMP biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5686 PWY-5686]
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** '''6''' reactions found over '''6''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-aragem]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
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*** Assignment: go-term
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== Pathways associated ==
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* [[PWY-1042]]
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* [[PWY-7003]]
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* [[SUCSYN-PWY]]
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* [[GLYCOLYSIS]]
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* [[PWY-6901]]
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* [[P124-PWY]]
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* [[ANAGLYCOLYSIS-PWY]]
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* [[GLUCONEO-PWY]]
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* [[P122-PWY]]
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* [[P185-PWY]]
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* [[PWY-5484]]
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* [[PWY66-399]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: left end position=3296289}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11596 11596]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: right end position=3300091}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00965 R00965]
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{{#set: centisome position=55.20786    }}
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* UNIPROT:
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{{#set: common name=Esi_0035_0157|Esi0035_0157}}
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** [http://www.uniprot.org/uniprot/P11172 P11172]
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{{#set: reaction associated=GAPOXNPHOSPHN-RXN}}
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** [http://www.uniprot.org/uniprot/Q9KQT7 Q9KQT7]
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{{#set: pathway associated=PWY-1042|PWY-7003|SUCSYN-PWY|GLYCOLYSIS|PWY-6901|P124-PWY|ANAGLYCOLYSIS-PWY|GLUCONEO-PWY|P122-PWY|P185-PWY|PWY-5484|PWY66-399}}
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** [http://www.uniprot.org/uniprot/Q9CFW9 Q9CFW9]
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** [http://www.uniprot.org/uniprot/P24220 P24220]
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** [http://www.uniprot.org/uniprot/P0A5M7 P0A5M7]
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** [http://www.uniprot.org/uniprot/P43812 P43812]
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** [http://www.uniprot.org/uniprot/Q9PIC1 Q9PIC1]
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** [http://www.uniprot.org/uniprot/P10652 P10652]
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** [http://www.uniprot.org/uniprot/P07817 P07817]
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** [http://www.uniprot.org/uniprot/P03962 P03962]
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** [http://www.uniprot.org/uniprot/P14017 P14017]
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** [http://www.uniprot.org/uniprot/P07691 P07691]
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** [http://www.uniprot.org/uniprot/P08244 P08244]
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** [http://www.uniprot.org/uniprot/P13439 P13439]
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** [http://www.uniprot.org/uniprot/P05035 P05035]
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** [http://www.uniprot.org/uniprot/P09463 P09463]
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** [http://www.uniprot.org/uniprot/P14964 P14964]
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** [http://www.uniprot.org/uniprot/P21593 P21593]
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** [http://www.uniprot.org/uniprot/P15188 P15188]
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** [http://www.uniprot.org/uniprot/P07922 P07922]
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** [http://www.uniprot.org/uniprot/P0A5M6 P0A5M6]
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** [http://www.uniprot.org/uniprot/Q9JV18 Q9JV18]
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** [http://www.uniprot.org/uniprot/P25971 P25971]
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** [http://www.uniprot.org/uniprot/P46535 P46535]
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** [http://www.uniprot.org/uniprot/P31754 P31754]
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** [http://www.uniprot.org/uniprot/P32430 P32430]
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** [http://www.uniprot.org/uniprot/Q01637 Q01637]
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** [http://www.uniprot.org/uniprot/P09556 P09556]
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** [http://www.uniprot.org/uniprot/P21594 P21594]
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** [http://www.uniprot.org/uniprot/Q06375 Q06375]
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** [http://www.uniprot.org/uniprot/P41769 P41769]
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** [http://www.uniprot.org/uniprot/Q18516 Q18516]
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** [http://www.uniprot.org/uniprot/Q59654 Q59654]
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** [http://www.uniprot.org/uniprot/Q42586 Q42586]
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** [http://www.uniprot.org/uniprot/P48844 P48844]
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** [http://www.uniprot.org/uniprot/P43230 P43230]
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** [http://www.uniprot.org/uniprot/Q42942 Q42942]
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** [http://www.uniprot.org/uniprot/O74110 O74110]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=Aldolase-type TIM barrel}}
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{{#set: ec number=EC-4.1.1.23}}
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{{#set: gene associated=Ec-23_000110}}
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{{#set: in pathway=PWY-5686}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 20:43, 21 March 2018

Gene Ec-19_003020

  • left end position:
    • 3296289
  • transcription direction:
    • POSITIVE
  • right end position:
    • 3300091
  • centisome position:
    • 55.20786
  • Synonym(s):
    • Esi_0035_0157
    • Esi0035_0157

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=Ec-19_003020&oldid=28905"