Difference between revisions of "UBIQUITIN--PROTEIN-LIGASE-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.6.3.1-RXN 3.6.3.1-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** phospholipid-translocat...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=UBIQUITIN--PROTEIN-LIGASE-RXN UBIQUITIN--PROTEIN-LIGASE-RXN] == * direction: ** LEFT-TO-RIGHT * com...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.6.3.1-RXN 3.6.3.1-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=UBIQUITIN--PROTEIN-LIGASE-RXN UBIQUITIN--PROTEIN-LIGASE-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** phospholipid-translocating ATPase
+
** ubiquitin-protein transferase
 +
** Ubiquitin-activating enzyme e1, C-terminal
 +
** putative ubiquitin activating enzyme
 +
** Ubiquitin activating enzyme (E1) subunit UBA3
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/3.6.3.1 EC-3.6.3.1]
+
** [http://enzyme.expasy.org/EC/6.2.1.45 EC-6.2.1.45]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[ATP]][c] '''+''' 1 [[WATER]][c] '''+''' 1 [[Phospholipids]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[Pi]][c] '''+''' 1 [[Phospholipids]][e] '''+''' 1 [[PROTON]][c]
+
** 1 [[Ubiquitin-C-Terminal-Glycine]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[Ubiquitin-activating-protein-E1-L-cys]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[S-ubiquitinyl-UAP-E1-L-cysteine]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 ATP[c] '''+''' 1 H2O[c] '''+''' 1 a phospholipid[c] '''=>''' 1 ADP[c] '''+''' 1 phosphate[c] '''+''' 1 a phospholipid[e] '''+''' 1 H+[c]
+
** 1 a [ubiquitin] C-terminal glycine[c] '''+''' 1 ATP[c] '''+''' 1 an [E1 ubiquitin-activating enzyme]-L-cysteine[c] '''=>''' 1 AMP[c] '''+''' 1 diphosphate[c] '''+''' 1 an S-ubiquitinyl-[E1 ubiquitin-activating enzyme]-L-cysteine[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Ec-25_003160]]
+
* Gene: [[Ec-09_004750]]
−
** ESILICULOSUS_GENOME
+
** Source: [[annotation-esiliculosus_genome]]
−
***GO-TERM
+
*** Assignment: EC-NUMBER
−
* [[Ec-10_001840]]
+
* Gene: [[Ec-13_002660]]
−
** ESILICULOSUS_GENOME
+
** Source: [[annotation-esiliculosus_genome]]
−
***GO-TERM
+
*** Assignment: GO-TERM
 +
* Gene: [[Ec-01_007490]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
 +
* Gene: [[Ec-26_001140]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
 +
* Gene: [[Ec-22_002200]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
 +
* Gene: [[Ec-01_008900]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
 +
* Gene: [[Ec-01_009550]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
 +
* Gene: [[Ec-06_002450]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
 +
* Gene: [[Ec-25_000510]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
 +
* Gene: [[Ec-25_002490]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
 +
* Gene: [[Ec-18_001830]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
 +
* Gene: [[Ec-01_001660]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
 +
* Gene: [[Ec-14_006720]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
 +
* Gene: [[Ec-25_000920]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
 +
* Gene: [[Ec-14_003730]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
 +
* Gene: [[Ec-00_007160]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
 +
* Gene: [[Ec-25_000910]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
 +
* Gene: [[Ec-09_000720]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
 +
* Gene: [[Ec-14_001990]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
 +
* Gene: [[Ec-25_002630]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
 +
* Gene: [[Ec-27_002840]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
 +
* Gene: [[Ec-01_010570]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
 +
* Gene: [[Ec-16_001360]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
 +
* Gene: [[Ec-24_003940]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Ec-12_000320]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 
== Pathways  ==
 
== Pathways  ==
 +
* [[PWY-7511]], protein ubiquitylation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7511 PWY-7511]
 +
** '''9''' reactions found over '''9''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[annotation]]
 
* Category: [[annotation]]
Line 29: Line 103:
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
* LIGAND-RXN:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14989 14989]
+
** [http://www.genome.jp/dbget-bin/www_bget?R03876 R03876]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P22314 P22314]
 +
** [http://www.uniprot.org/uniprot/P49459 P49459]
 +
** [http://www.uniprot.org/uniprot/P62256 P62256]
 +
** [http://www.uniprot.org/uniprot/P63146 P63146]
 +
** [http://www.uniprot.org/uniprot/P28263 P28263]
 +
** [http://www.uniprot.org/uniprot/Q02053 Q02053]
 +
** [http://www.uniprot.org/uniprot/P62257 P62257]
 +
** [http://www.uniprot.org/uniprot/P61088 P61088]
 +
** [http://www.uniprot.org/uniprot/P63279 P63279]
 +
** [http://www.uniprot.org/uniprot/P19812 P19812]
 +
** [http://www.uniprot.org/uniprot/P21734 P21734]
 +
** [http://www.uniprot.org/uniprot/P25869 P25869]
 +
** [http://www.uniprot.org/uniprot/P31254 P31254]
 +
** [http://www.uniprot.org/uniprot/P15731 P15731]
 +
** [http://www.uniprot.org/uniprot/P15732 P15732]
 +
** [http://www.uniprot.org/uniprot/P29340 P29340]
 +
** [http://www.uniprot.org/uniprot/P35133 P35133]
 +
** [http://www.uniprot.org/uniprot/P35134 P35134]
 +
** [http://www.uniprot.org/uniprot/P35132 P35132]
 +
** [http://www.uniprot.org/uniprot/P33296 P33296]
 +
** [http://www.uniprot.org/uniprot/P22515 P22515]
 +
** [http://www.uniprot.org/uniprot/P39940 P39940]
 +
** [http://www.uniprot.org/uniprot/P42748 P42748]
 +
** [http://www.uniprot.org/uniprot/P42750 P42750]
 +
** [http://www.uniprot.org/uniprot/P42749 P42749]
 +
** [http://www.uniprot.org/uniprot/P42747 P42747]
 +
** [http://www.uniprot.org/uniprot/P50623 P50623]
 +
** [http://www.uniprot.org/uniprot/Q42973 Q42973]
 +
** [http://www.uniprot.org/uniprot/P40984 P40984]
 +
** [http://www.uniprot.org/uniprot/Q92462 Q92462]
 +
** [http://www.uniprot.org/uniprot/Q42540 Q42540]
 +
** [http://www.uniprot.org/uniprot/P93028 P93028]
 +
** [http://www.uniprot.org/uniprot/P93393 P93393]
 +
** [http://www.uniprot.org/uniprot/P31252 P31252]
 +
** [http://www.uniprot.org/uniprot/P52486 P52486]
 +
** [http://www.uniprot.org/uniprot/Q9YGM6 Q9YGM6]
 +
** [http://www.uniprot.org/uniprot/O42646 O42646]
 +
** [http://www.uniprot.org/uniprot/O15979 O15979]
 +
** [http://www.uniprot.org/uniprot/P23566 P23566]
 +
** [http://www.uniprot.org/uniprot/Q96PU5 Q96PU5]
 +
** [http://www.uniprot.org/uniprot/P27949 P27949]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=phospholipid-translocating ATPase}}
+
{{#set: common name=ubiquitin-protein transferase}}
−
{{#set: ec number=EC-3.6.3.1}}
+
{{#set: common name=Ubiquitin-activating enzyme e1, C-terminal}}
−
{{#set: gene associated=Ec-25_003160|Ec-10_001840}}
+
{{#set: common name=putative ubiquitin activating enzyme}}
−
{{#set: in pathway=}}
+
{{#set: common name=Ubiquitin activating enzyme (E1) subunit UBA3}}
 +
{{#set: ec number=EC-6.2.1.45}}
 +
{{#set: gene associated=Ec-09_004750|Ec-13_002660|Ec-01_007490|Ec-26_001140|Ec-22_002200|Ec-01_008900|Ec-01_009550|Ec-06_002450|Ec-25_000510|Ec-25_002490|Ec-18_001830|Ec-01_001660|Ec-14_006720|Ec-25_000920|Ec-14_003730|Ec-00_007160|Ec-25_000910|Ec-09_000720|Ec-14_001990|Ec-25_002630|Ec-27_002840|Ec-01_010570|Ec-16_001360|Ec-24_003940|Ec-12_000320}}
 +
{{#set: in pathway=PWY-7511}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction source=annotation-esiliculosus_genome}}
 
{{#set: reconstruction source=annotation-esiliculosus_genome}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 20:44, 21 March 2018

Reaction UBIQUITIN--PROTEIN-LIGASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • ubiquitin-protein transferase
    • Ubiquitin-activating enzyme e1, C-terminal
    • putative ubiquitin activating enzyme
    • Ubiquitin activating enzyme (E1) subunit UBA3
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7511, protein ubiquitylation: PWY-7511
    • 9 reactions found over 9 reactions in the full pathway

Reconstruction information

External links






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