Difference between revisions of "Ec-07 007720"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3-DEHYDROQUINATE-DEHYDRATASE-RXN 3-DEHYDROQUINATE-DEHYDRATASE-RXN] == * direction: ** REVERSIBLE *...")
(Created page with "Category:Gene == Gene Ec-07_007720 == * left end position: ** 7497639 * transcription direction: ** NEGATIVE * right end position: ** 7501025 * centisome position: ** 97.0...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3-DEHYDROQUINATE-DEHYDRATASE-RXN 3-DEHYDROQUINATE-DEHYDRATASE-RXN] ==
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== Gene Ec-07_007720 ==
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* direction:
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* left end position:
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** REVERSIBLE
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** 7497639
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* common name:
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* transcription direction:
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** 3-dehydroquinate dehydratase
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** NEGATIVE
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* ec number:
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* right end position:
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** [http://enzyme.expasy.org/EC/4.2.1.10 EC-4.2.1.10]
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** 7501025
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* centisome position:
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** 97.08912   
 
* Synonym(s):
 
* Synonym(s):
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** Esi_0124_0039
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** Esi0124_0039
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[AMINOCYL-TRNA-HYDROLASE-RXN]]
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** 1 [[DEHYDROQUINATE]][c] '''<=>''' 1 [[3-DEHYDRO-SHIKIMATE]][c] '''+''' 1 [[WATER]][c]
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** Source: [[annotation-esiliculosus_genome]]
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* With common name(s):
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*** Assignment: go-term
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** 1 3-dehydroquinate[c] '''<=>''' 1 3-dehydroshikimate[c] '''+''' 1 H2O[c]
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* Reaction: [[RXN-12460]]
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** Source: [[annotation-esiliculosus_genome]]
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== Genes associated with this reaction  ==
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*** Assignment: go-term
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Genes have been associated with this reaction based on different elements listed below.
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* Reaction: [[RXN-16637]]
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* [[Ec-07_000550]]
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** ESILICULOSUS_GENOME
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***GO-TERM
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* [[Ec-26_004120]]
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** [[pantograph]]-[[aragem]]
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* [[Ec-02_006010]]
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** [[pantograph]]-[[aragem]]
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* [[Ec-14_005400]]
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** [[pantograph]]-[[aragem]]
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== Pathways  ==
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* [[PWY-6163]], chorismate biosynthesis from 3-dehydroquinate: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6163 PWY-6163]
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** '''6''' reactions found over '''6''' reactions in the full pathway
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* [[PWY-6416]], quinate degradation II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6416 PWY-6416]
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** '''2''' reactions found over '''3''' reactions in the full pathway
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* [[QUINATEDEG-PWY]], quinate degradation I: [http://metacyc.org/META/NEW-IMAGE?object=QUINATEDEG-PWY QUINATEDEG-PWY]
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** '''1''' reactions found over '''3''' reactions in the full pathway
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* [[PWY-6707]], gallate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6707 PWY-6707]
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** '''1''' reactions found over '''3''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-aragem]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
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*** Assignment: go-term
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== Pathways associated ==
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* [[PWY490-4]]
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* [[PWY-6308]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: left end position=7497639}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21096 21096]
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{{#set: transcription direction=NEGATIVE}}
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* LIGAND-RXN:
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{{#set: right end position=7501025}}
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** [http://www.genome.jp/dbget-bin/www_bget?R03084 R03084]
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{{#set: centisome position=97.08912    }}
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* UNIPROT:
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{{#set: common name=Esi_0124_0039|Esi0124_0039}}
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** [http://www.uniprot.org/uniprot/P05195 P05195]
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{{#set: reaction associated=AMINOCYL-TRNA-HYDROLASE-RXN|RXN-12460|RXN-16637}}
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** [http://www.uniprot.org/uniprot/P46380 P46380]
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{{#set: pathway associated=PWY490-4|PWY-6308}}
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** [http://www.uniprot.org/uniprot/Q9CF39 Q9CF39]
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** [http://www.uniprot.org/uniprot/P07547 P07547]
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** [http://www.uniprot.org/uniprot/P08566 P08566]
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** [http://www.uniprot.org/uniprot/P43878 P43878]
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** [http://www.uniprot.org/uniprot/P05194 P05194]
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** [http://www.uniprot.org/uniprot/Q58849 Q58849]
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** [http://www.uniprot.org/uniprot/P0A4Z6 P0A4Z6]
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** [http://www.uniprot.org/uniprot/Q9PJ53 Q9PJ53]
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** [http://www.uniprot.org/uniprot/P05147 P05147]
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** [http://www.uniprot.org/uniprot/P24670 P24670]
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** [http://www.uniprot.org/uniprot/P35146 P35146]
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** [http://www.uniprot.org/uniprot/Q42947 Q42947]
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** [http://www.uniprot.org/uniprot/Q48255 Q48255]
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** [http://www.uniprot.org/uniprot/P73367 P73367]
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** [http://www.uniprot.org/uniprot/O65917 O65917]
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{{#set: direction=REVERSIBLE}}
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{{#set: common name=3-dehydroquinate dehydratase}}
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{{#set: ec number=EC-4.2.1.10}}
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{{#set: gene associated=Ec-07_000550|Ec-26_004120|Ec-02_006010|Ec-14_005400}}
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{{#set: in pathway=PWY-6163|PWY-6416|QUINATEDEG-PWY|PWY-6707}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 19:44, 21 March 2018

Gene Ec-07_007720

  • left end position:
    • 7497639
  • transcription direction:
    • NEGATIVE
  • right end position:
    • 7501025
  • centisome position:
    • 97.08912
  • Synonym(s):
    • Esi_0124_0039
    • Esi0124_0039

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=Ec-07_007720&oldid=29057"