Difference between revisions of "SERINE--TRNA-LIGASE-RXN"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-13695 CPD-13695] == * smiles: ** CC(CCC(=O)C(C(=O)SCCNC(=O)CCNC(=O)C(O)C(C)(C)COP(=O)(OP(=O...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=SERINE--TRNA-LIGASE-RXN SERINE--TRNA-LIGASE-RXN] == * direction: ** LEFT-TO-RIGHT * common name: **...")
 
(2 intermediate revisions by the same user not shown)
Line 1: Line 1:
−
[[Category:Metabolite]]
+
[[Category:Reaction]]
−
== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-13695 CPD-13695] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=SERINE--TRNA-LIGASE-RXN SERINE--TRNA-LIGASE-RXN] ==
−
* smiles:
+
* direction:
−
** CC(CCC(=O)C(C(=O)SCCNC(=O)CCNC(=O)C(O)C(C)(C)COP(=O)(OP(=O)(OCC1(C(OP([O-])(=O)[O-])C(O)C(O1)N3(C2(=C(C(N)=NC=N2)N=C3))))[O-])[O-])C)[CH]6(CC[CH]7([CH]5(CCC4(=CC(=O)CCC(C)4[CH]5CCC(C)67))))
+
** LEFT-TO-RIGHT
−
* inchi key:
+
−
** InChIKey=ZVFUUGBGZMBUAN-KZNRQMKSSA-J
+
 
* common name:
 
* common name:
−
** 3,24-dioxocholest-4-en-26-oyl-CoA
+
** Seryl-tRNA synthetase
−
* molecular weight:
+
** serine-tRNA ligase
−
** 1174.098   
+
* ec number:
 +
** [http://enzyme.expasy.org/EC/6.1.1.11 EC-6.1.1.11]
 
* Synonym(s):
 
* Synonym(s):
−
** cholest-4-en--3,24,dione-26-oyl-CoA
 
  
−
== Reaction(s) known to consume the compound ==
+
== Reaction Formula ==
−
== Reaction(s) known to produce the compound ==
+
* With identifiers:
−
* [[RXN-12705]]
+
** 1 [[SER-tRNAs]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[SER]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Charged-SER-tRNAs]][c] '''+''' 1 [[PPI]][c]
−
== Reaction(s) of unknown directionality ==
+
* With common name(s):
 +
** 1 a tRNAser[c] '''+''' 1 H+[c] '''+''' 1 ATP[c] '''+''' 1 L-serine[c] '''=>''' 1 AMP[c] '''+''' 1 an L-seryl-[tRNAser][c] '''+''' 1 diphosphate[c]
 +
 
 +
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[Ec-24_004300]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Ec-08_002360]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
 +
== Pathways  ==
 +
* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
 +
** '''21''' reactions found over '''21''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[annotation]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* PUBCHEM:
+
* RHEA:
−
** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=90659292 90659292]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12292 12292]
−
{{#set: smiles=CC(CCC(=O)C(C(=O)SCCNC(=O)CCNC(=O)C(O)C(C)(C)COP(=O)(OP(=O)(OCC1(C(OP([O-])(=O)[O-])C(O)C(O1)N3(C2(=C(C(N)=NC=N2)N=C3))))[O-])[O-])C)[CH]6(CC[CH]7([CH]5(CCC4(=CC(=O)CCC(C)4[CH]5CCC(C)67))))}}
+
* LIGAND-RXN:
−
{{#set: inchi key=InChIKey=ZVFUUGBGZMBUAN-KZNRQMKSSA-J}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R03662 R03662]
−
{{#set: common name=3,24-dioxocholest-4-en-26-oyl-CoA}}
+
* UNIPROT:
−
{{#set: molecular weight=1174.098    }}
+
** [http://www.uniprot.org/uniprot/Q9ZCG5 Q9ZCG5]
−
{{#set: common name=cholest-4-en--3,24,dione-26-oyl-CoA}}
+
** [http://www.uniprot.org/uniprot/O51244 O51244]
−
{{#set: produced by=RXN-12705}}
+
** [http://www.uniprot.org/uniprot/O66647 O66647]
 +
** [http://www.uniprot.org/uniprot/Q9PIB3 Q9PIB3]
 +
** [http://www.uniprot.org/uniprot/Q58477 Q58477]
 +
** [http://www.uniprot.org/uniprot/O27194 O27194]
 +
** [http://www.uniprot.org/uniprot/O84734 O84734]
 +
** [http://www.uniprot.org/uniprot/Q9X199 Q9X199]
 +
** [http://www.uniprot.org/uniprot/P47251 P47251]
 +
** [http://www.uniprot.org/uniprot/Q9JT77 Q9JT77]
 +
** [http://www.uniprot.org/uniprot/O83653 O83653]
 +
** [http://www.uniprot.org/uniprot/Q9Z736 Q9Z736]
 +
** [http://www.uniprot.org/uniprot/P49591 P49591]
 +
** [http://www.uniprot.org/uniprot/P56458 P56458]
 +
** [http://www.uniprot.org/uniprot/Q9ZJD9 Q9ZJD9]
 +
** [http://www.uniprot.org/uniprot/Q9CEX2 Q9CEX2]
 +
** [http://www.uniprot.org/uniprot/P43833 P43833]
 +
** [http://www.uniprot.org/uniprot/P26636 P26636]
 +
** [http://www.uniprot.org/uniprot/P39919 P39919]
 +
** [http://www.uniprot.org/uniprot/P37464 P37464]
 +
** [http://www.uniprot.org/uniprot/Q39230 Q39230]
 +
** [http://www.uniprot.org/uniprot/P75107 P75107]
 +
** [http://www.uniprot.org/uniprot/P73201 P73201]
 +
** [http://www.uniprot.org/uniprot/O82108 O82108]
 +
** [http://www.uniprot.org/uniprot/O82110 O82110]
 +
** [http://www.uniprot.org/uniprot/O81983 O81983]
 +
** [http://www.uniprot.org/uniprot/O45887 O45887]
 +
** [http://www.uniprot.org/uniprot/O14018 O14018]
 +
** [http://www.uniprot.org/uniprot/P54221 P54221]
 +
** [http://www.uniprot.org/uniprot/P07284 P07284]
 +
** [http://www.uniprot.org/uniprot/P0A8L1 P0A8L1]
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=Seryl-tRNA synthetase}}
 +
{{#set: common name=serine-tRNA ligase}}
 +
{{#set: ec number=EC-6.1.1.11}}
 +
{{#set: gene associated=Ec-24_004300|Ec-08_002360}}
 +
{{#set: in pathway=TRNA-CHARGING-PWY}}
 +
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction source=annotation-esiliculosus_genome}}
 +
{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 20:46, 21 March 2018

Reaction SERINE--TRNA-LIGASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Seryl-tRNA synthetase
    • serine-tRNA ligase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 a tRNAser[c] + 1 H+[c] + 1 ATP[c] + 1 L-serine[c] => 1 AMP[c] + 1 an L-seryl-[tRNAser][c] + 1 diphosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=SERINE--TRNA-LIGASE-RXN&oldid=29156"