Difference between revisions of "SERINE--TRNA-LIGASE-RXN"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-13695 CPD-13695] == * smiles: ** CC(CCC(=O)C(C(=O)SCCNC(=O)CCNC(=O)C(O)C(C)(C)COP(=O)(OP(=O...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=SERINE--TRNA-LIGASE-RXN SERINE--TRNA-LIGASE-RXN] == * direction: ** LEFT-TO-RIGHT * common name: **...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-13695 CPD-13695] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=SERINE--TRNA-LIGASE-RXN SERINE--TRNA-LIGASE-RXN] ==
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* smiles:
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* direction:
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** CC(CCC(=O)C(C(=O)SCCNC(=O)CCNC(=O)C(O)C(C)(C)COP(=O)(OP(=O)(OCC1(C(OP([O-])(=O)[O-])C(O)C(O1)N3(C2(=C(C(N)=NC=N2)N=C3))))[O-])[O-])C)[CH]6(CC[CH]7([CH]5(CCC4(=CC(=O)CCC(C)4[CH]5CCC(C)67))))
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** LEFT-TO-RIGHT
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* inchi key:
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** InChIKey=ZVFUUGBGZMBUAN-KZNRQMKSSA-J
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* common name:
 
* common name:
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** 3,24-dioxocholest-4-en-26-oyl-CoA
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** Seryl-tRNA synthetase
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* molecular weight:
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** serine-tRNA ligase
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** 1174.098   
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* ec number:
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** [http://enzyme.expasy.org/EC/6.1.1.11 EC-6.1.1.11]
 
* Synonym(s):
 
* Synonym(s):
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** cholest-4-en--3,24,dione-26-oyl-CoA
 
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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== Reaction(s) known to produce the compound ==
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* With identifiers:
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* [[RXN-12705]]
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** 1 [[SER-tRNAs]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[SER]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Charged-SER-tRNAs]][c] '''+''' 1 [[PPI]][c]
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== Reaction(s) of unknown directionality ==
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* With common name(s):
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** 1 a tRNAser[c] '''+''' 1 H+[c] '''+''' 1 ATP[c] '''+''' 1 L-serine[c] '''=>''' 1 AMP[c] '''+''' 1 an L-seryl-[tRNAser][c] '''+''' 1 diphosphate[c]
 +
 
 +
== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Ec-24_004300]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: EC-NUMBER
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* Gene: [[Ec-08_002360]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: GO-TERM
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== Pathways  ==
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* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
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** '''21''' reactions found over '''21''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[annotation]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* PUBCHEM:
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* RHEA:
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=90659292 90659292]
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12292 12292]
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{{#set: smiles=CC(CCC(=O)C(C(=O)SCCNC(=O)CCNC(=O)C(O)C(C)(C)COP(=O)(OP(=O)(OCC1(C(OP([O-])(=O)[O-])C(O)C(O1)N3(C2(=C(C(N)=NC=N2)N=C3))))[O-])[O-])C)[CH]6(CC[CH]7([CH]5(CCC4(=CC(=O)CCC(C)4[CH]5CCC(C)67))))}}
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* LIGAND-RXN:
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{{#set: inchi key=InChIKey=ZVFUUGBGZMBUAN-KZNRQMKSSA-J}}
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** [http://www.genome.jp/dbget-bin/www_bget?R03662 R03662]
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{{#set: common name=3,24-dioxocholest-4-en-26-oyl-CoA}}
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* UNIPROT:
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{{#set: molecular weight=1174.098    }}
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** [http://www.uniprot.org/uniprot/Q9ZCG5 Q9ZCG5]
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{{#set: common name=cholest-4-en--3,24,dione-26-oyl-CoA}}
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** [http://www.uniprot.org/uniprot/O51244 O51244]
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{{#set: produced by=RXN-12705}}
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** [http://www.uniprot.org/uniprot/O66647 O66647]
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** [http://www.uniprot.org/uniprot/Q9PIB3 Q9PIB3]
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** [http://www.uniprot.org/uniprot/Q58477 Q58477]
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** [http://www.uniprot.org/uniprot/O27194 O27194]
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** [http://www.uniprot.org/uniprot/O84734 O84734]
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** [http://www.uniprot.org/uniprot/Q9X199 Q9X199]
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** [http://www.uniprot.org/uniprot/P47251 P47251]
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** [http://www.uniprot.org/uniprot/Q9JT77 Q9JT77]
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** [http://www.uniprot.org/uniprot/O83653 O83653]
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** [http://www.uniprot.org/uniprot/Q9Z736 Q9Z736]
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** [http://www.uniprot.org/uniprot/P49591 P49591]
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** [http://www.uniprot.org/uniprot/P56458 P56458]
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** [http://www.uniprot.org/uniprot/Q9ZJD9 Q9ZJD9]
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** [http://www.uniprot.org/uniprot/Q9CEX2 Q9CEX2]
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** [http://www.uniprot.org/uniprot/P43833 P43833]
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** [http://www.uniprot.org/uniprot/P26636 P26636]
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** [http://www.uniprot.org/uniprot/P39919 P39919]
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** [http://www.uniprot.org/uniprot/P37464 P37464]
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** [http://www.uniprot.org/uniprot/Q39230 Q39230]
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** [http://www.uniprot.org/uniprot/P75107 P75107]
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** [http://www.uniprot.org/uniprot/P73201 P73201]
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** [http://www.uniprot.org/uniprot/O82108 O82108]
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** [http://www.uniprot.org/uniprot/O82110 O82110]
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** [http://www.uniprot.org/uniprot/O81983 O81983]
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** [http://www.uniprot.org/uniprot/O45887 O45887]
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** [http://www.uniprot.org/uniprot/O14018 O14018]
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** [http://www.uniprot.org/uniprot/P54221 P54221]
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** [http://www.uniprot.org/uniprot/P07284 P07284]
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** [http://www.uniprot.org/uniprot/P0A8L1 P0A8L1]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=Seryl-tRNA synthetase}}
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{{#set: common name=serine-tRNA ligase}}
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{{#set: ec number=EC-6.1.1.11}}
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{{#set: gene associated=Ec-24_004300|Ec-08_002360}}
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{{#set: in pathway=TRNA-CHARGING-PWY}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome}}
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{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 19:46, 21 March 2018

Reaction SERINE--TRNA-LIGASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Seryl-tRNA synthetase
    • serine-tRNA ligase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 a tRNAser[c] + 1 H+[c] + 1 ATP[c] + 1 L-serine[c] => 1 AMP[c] + 1 an L-seryl-[tRNAser][c] + 1 diphosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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