Difference between revisions of "RXN0-5222"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3PGAREARR-RXN 3PGAREARR-RXN] == * direction: ** REVERSIBLE * common name: ** phosphoglycerate mutas...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-5222 RXN0-5222] == * direction: ** LEFT-TO-RIGHT * common name: ** cyanase * Synonym(s): ** cy...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3PGAREARR-RXN 3PGAREARR-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-5222 RXN0-5222] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** phosphoglycerate mutase
+
** cyanase
−
* ec number:
+
−
** [http://enzyme.expasy.org/EC/5.4.2.12 EC-5.4.2.12]
+
 
* Synonym(s):
 
* Synonym(s):
 +
** cyanate lyase
 +
** cyanate hydrolase
 +
** cyanate aminohydrolase
 +
** cyanate C-N-lyase
 +
** cyanate hydratase
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[2-PG]][c] '''<=>''' 1 [[G3P]][c]
+
** 1 [[CARBAMATE]][c] '''+''' 2 [[PROTON]][c] '''=>''' 1 [[AMMONIUM]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 2-phospho-D-glycerate[c] '''<=>''' 1 3-phospho-D-glycerate[c]
+
** 1 carbamate[c] '''+''' 2 H+[c] '''=>''' 1 ammonium[c] '''+''' 1 CO2[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
−
Genes have been associated with this reaction based on different elements listed below.
 
−
* [[Ec-06_009930]]
 
−
** [[pantograph]]-[[aragem]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-10_005410]]
 
−
** ESILICULOSUS_GENOME
 
−
***GO-TERM
 
−
** [[pantograph]]-[[aragem]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-24_002670]]
 
−
** [[pantograph]]-[[aragem]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-03_002170]]
 
−
** ESILICULOSUS_GENOME
 
−
***GO-TERM
 
−
** [[pantograph]]-[[aragem]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-03_002160]]
 
−
** [[pantograph]]-[[aragem]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-27_000330]]
 
−
** [[pantograph]]-[[aragem]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-01_000980]]
 
−
** [[pantograph]]-[[aragem]]
 
−
** [[pantograph]]-[[aragem]]
 
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-1042]], glycolysis IV (plant cytosol): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1042 PWY-1042]
+
* [[CYANCAT-PWY]], cyanate degradation: [http://metacyc.org/META/NEW-IMAGE?object=CYANCAT-PWY CYANCAT-PWY]
−
** '''8''' reactions found over '''10''' reactions in the full pathway
+
** '''2''' reactions found over '''3''' reactions in the full pathway
−
* [[P341-PWY]], glycolysis V (Pyrococcus): [http://metacyc.org/META/NEW-IMAGE?object=P341-PWY P341-PWY]
+
* [[PWY0-1471]], uracil degradation III: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1471 PWY0-1471]
−
** '''6''' reactions found over '''9''' reactions in the full pathway
+
** '''1''' reactions found over '''6''' reactions in the full pathway
−
* [[PWY-2221]], Entner-Doudoroff pathway III (semi-phosphorylative): [http://metacyc.org/META/NEW-IMAGE?object=PWY-2221 PWY-2221]
+
−
** '''5''' reactions found over '''9''' reactions in the full pathway
+
−
* [[GLUCONEO-PWY]], gluconeogenesis I: [http://metacyc.org/META/NEW-IMAGE?object=GLUCONEO-PWY GLUCONEO-PWY]
+
−
** '''13''' reactions found over '''13''' reactions in the full pathway
+
−
* [[GLYCOLYSIS]], glycolysis I (from glucose 6-phosphate): [http://metacyc.org/META/NEW-IMAGE?object=GLYCOLYSIS GLYCOLYSIS]
+
−
** '''12''' reactions found over '''12''' reactions in the full pathway
+
−
* [[PWY-6901]], superpathway of glucose and xylose degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6901 PWY-6901]
+
−
** '''9''' reactions found over '''12''' reactions in the full pathway
+
−
* [[PWY-7218]], photosynthetic 3-hydroxybutanoate biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7218 PWY-7218]
+
−
** '''7''' reactions found over '''10''' reactions in the full pathway
+
−
* [[P124-PWY]], Bifidobacterium shunt: [http://metacyc.org/META/NEW-IMAGE?object=P124-PWY P124-PWY]
+
−
** '''12''' reactions found over '''15''' reactions in the full pathway
+
−
* [[PWY-6886]], 1-butanol autotrophic biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6886 PWY-6886]
+
−
** '''8''' reactions found over '''11''' reactions in the full pathway
+
−
* [[PWY-5723]], Rubisco shunt: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5723 PWY-5723]
+
−
** '''10''' reactions found over '''10''' reactions in the full pathway
+
−
* [[PWY-6142]], gluconeogenesis II (Methanobacterium thermoautotrophicum): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6142 PWY-6142]
+
−
** '''10''' reactions found over '''14''' reactions in the full pathway
+
−
* [[PWY-5484]], glycolysis II (from fructose 6-phosphate): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5484 PWY-5484]
+
−
** '''11''' reactions found over '''11''' reactions in the full pathway
+
−
* [[PWY-7124]], ethylene biosynthesis V (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7124 PWY-7124]
+
−
** '''8''' reactions found over '''10''' reactions in the full pathway
+
−
* [[PWY-7003]], glycerol degradation to butanol: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7003 PWY-7003]
+
−
** '''8''' reactions found over '''10''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[annotation]]
−
** [[pantograph]]:
+
** Source: [[annotation-esiliculosus_genome]]
−
*** [[aragem]]
+
*** Tool: [[pathwaytools]]
−
* [[annotation]]:
+
−
** [[pathwaytools]]:
+
−
*** [[esiliculosus_genome]]
+
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15901 15901]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15649 15649]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01518 R01518]
+
** [http://www.genome.jp/dbget-bin/www_bget?R07316 R07316]
−
* UNIPROT:
+
{{#set: direction=LEFT-TO-RIGHT}}
−
** [http://www.uniprot.org/uniprot/P30792 P30792]
+
{{#set: common name=cyanase}}
−
** [http://www.uniprot.org/uniprot/P52832 P52832]
+
{{#set: common name=cyanate lyase|cyanate hydrolase|cyanate aminohydrolase|cyanate C-N-lyase|cyanate hydratase}}
−
** [http://www.uniprot.org/uniprot/P44865 P44865]
+
{{#set: in pathway=CYANCAT-PWY|PWY0-1471}}
−
** [http://www.uniprot.org/uniprot/P30798 P30798]
+
−
** [http://www.uniprot.org/uniprot/P62707 P62707]
+
−
** [http://www.uniprot.org/uniprot/P39773 P39773]
+
−
** [http://www.uniprot.org/uniprot/P47669 P47669]
+
−
** [http://www.uniprot.org/uniprot/Q9CEU3 Q9CEU3]
+
−
** [http://www.uniprot.org/uniprot/P56196 P56196]
+
−
** [http://www.uniprot.org/uniprot/Q9JTF2 Q9JTF2]
+
−
** [http://www.uniprot.org/uniprot/Q9PI71 Q9PI71]
+
−
** [http://www.uniprot.org/uniprot/Q9CIM0 Q9CIM0]
+
−
** [http://www.uniprot.org/uniprot/P00950 P00950]
+
−
** [http://www.uniprot.org/uniprot/P18669 P18669]
+
−
** [http://www.uniprot.org/uniprot/P15259 P15259]
+
−
** [http://www.uniprot.org/uniprot/P16290 P16290]
+
−
** [http://www.uniprot.org/uniprot/P35167 P35167]
+
−
** [http://www.uniprot.org/uniprot/P33158 P33158]
+
−
** [http://www.uniprot.org/uniprot/Q06464 Q06464]
+
−
** [http://www.uniprot.org/uniprot/P36623 P36623]
+
−
** [http://www.uniprot.org/uniprot/P35494 P35494]
+
−
** [http://www.uniprot.org/uniprot/P37689 P37689]
+
−
** [http://www.uniprot.org/uniprot/P35493 P35493]
+
−
** [http://www.uniprot.org/uniprot/Q9VAN7 Q9VAN7]
+
−
** [http://www.uniprot.org/uniprot/Q42908 Q42908]
+
−
** [http://www.uniprot.org/uniprot/Q12326 Q12326]
+
−
** [http://www.uniprot.org/uniprot/P53531 P53531]
+
−
** [http://www.uniprot.org/uniprot/P51379 P51379]
+
−
** [http://www.uniprot.org/uniprot/P75167 P75167]
+
−
** [http://www.uniprot.org/uniprot/P72649 P72649]
+
−
** [http://www.uniprot.org/uniprot/P74507 P74507]
+
−
** [http://www.uniprot.org/uniprot/Q49006 Q49006]
+
−
** [http://www.uniprot.org/uniprot/O24246 O24246]
+
−
** [http://www.uniprot.org/uniprot/Q9X519 Q9X519]
+
−
{{#set: direction=REVERSIBLE}}
+
−
{{#set: common name=phosphoglycerate mutase}}
+
−
{{#set: ec number=EC-5.4.2.12}}
+
−
{{#set: gene associated=Ec-06_009930|Ec-10_005410|Ec-24_002670|Ec-03_002170|Ec-03_002160|Ec-27_000330|Ec-01_000980}}
+
−
{{#set: in pathway=PWY-1042|P341-PWY|PWY-2221|GLUCONEO-PWY|GLYCOLYSIS|PWY-6901|PWY-7218|P124-PWY|PWY-6886|PWY-5723|PWY-6142|PWY-5484|PWY-7124|PWY-7003}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=aragem}}
+
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction source=annotation-esiliculosus_genome}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction source=esiliculosus_genome}}
 

Latest revision as of 19:48, 21 March 2018

Reaction RXN0-5222

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • cyanase
  • Synonym(s):
    • cyanate lyase
    • cyanate hydrolase
    • cyanate aminohydrolase
    • cyanate C-N-lyase
    • cyanate hydratase

Reaction Formula

Genes associated with this reaction

Pathways

  • CYANCAT-PWY, cyanate degradation: CYANCAT-PWY
    • 2 reactions found over 3 reactions in the full pathway
  • PWY0-1471, uracil degradation III: PWY0-1471
    • 1 reactions found over 6 reactions in the full pathway

Reconstruction information

External links




Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=RXN0-5222&oldid=29390"