Difference between revisions of "RXN0-901"

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(Created page with "Category:Gene == Gene Ec-26_001140 == * left end position: ** 1504540 * transcription direction: ** NEGATIVE * right end position: ** 1508438 * centisome position: ** 22.8...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-901 RXN0-901] == * direction: ** REVERSIBLE * common name: ** xanthine dehydrogenase * ec numb...")
 
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Ec-26_001140 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-901 RXN0-901] ==
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* left end position:
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* direction:
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** 1504540
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** REVERSIBLE
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* transcription direction:
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* common name:
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** NEGATIVE
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** xanthine dehydrogenase
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* right end position:
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* ec number:
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** 1508438
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** [http://enzyme.expasy.org/EC/1.17.1.4 EC-1.17.1.4]
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* centisome position:
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** 22.853722   
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* Synonym(s):
 
* Synonym(s):
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** Esi_0161_0053
 
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** Esi0161_0053
 
  
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== Reactions associated ==
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== Reaction Formula ==
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* Reaction: [[UBIQUITIN--PROTEIN-LIGASE-RXN]]
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* With identifiers:
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** 1 [[XANTHINE]][c] '''+''' 1 [[WATER]][c] '''+''' 1 [[NAD]][c] '''<=>''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[URATE]][c]
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* With common name(s):
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** 1 xanthine[c] '''+''' 1 H2O[c] '''+''' 1 NAD+[c] '''<=>''' 1 NADH[c] '''+''' 1 H+[c] '''+''' 1 urate[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Ec-20_000230]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: AUTOMATED-NAME-MATCH
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** Source: [[orthology-aragem]]
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* Gene: [[Ec-20_000210]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: AUTOMATED-NAME-MATCH
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** Source: [[orthology-aragem]]
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== Pathways  ==
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* [[PWY-5497]], purine nucleobases degradation II (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5497 PWY-5497]
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** '''8''' reactions found over '''24''' reactions in the full pathway
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* [[SALVADEHYPOX-PWY]], adenosine nucleotides degradation II: [http://metacyc.org/META/NEW-IMAGE?object=SALVADEHYPOX-PWY SALVADEHYPOX-PWY]
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** '''5''' reactions found over '''5''' reactions in the full pathway
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* [[P164-PWY]], purine nucleobases degradation I (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=P164-PWY P164-PWY]
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** '''4''' reactions found over '''17''' reactions in the full pathway
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* [[PWY-6596]], adenosine nucleotides degradation I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6596 PWY-6596]
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** '''6''' reactions found over '''8''' reactions in the full pathway
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* [[PWY-6607]], guanosine nucleotides degradation I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6607 PWY-6607]
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** '''2''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-6606]], guanosine nucleotides degradation II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6606 PWY-6606]
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** '''3''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-6999]], theophylline degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6999 PWY-6999]
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** '''2''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-6608]], guanosine nucleotides degradation III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6608 PWY-6608]
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** '''2''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-5695]], urate biosynthesis/inosine 5'-phosphate degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5695 PWY-5695]
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** '''3''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-6538]], caffeine degradation III (bacteria, via demethylation): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6538 PWY-6538]
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** '''2''' reactions found over '''7''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-aragem]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
 
** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: go-term
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*** Tool: [[pathwaytools]]
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== Pathways associated ==
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* [[PWY-7511]]
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== External links  ==
 
== External links  ==
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{{#set: left end position=1504540}}
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* RHEA:
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{{#set: transcription direction=NEGATIVE}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16669 16669]
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{{#set: right end position=1508438}}
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* LIGAND-RXN:
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{{#set: centisome position=22.853722    }}
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** [http://www.genome.jp/dbget-bin/www_bget?R02103 R02103]
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{{#set: common name=Esi_0161_0053|Esi0161_0053}}
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* UNIPROT:
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{{#set: reaction associated=UBIQUITIN--PROTEIN-LIGASE-RXN}}
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** [http://www.uniprot.org/uniprot/Q62637 Q62637]
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{{#set: pathway associated=PWY-7511}}
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** [http://www.uniprot.org/uniprot/P22811 P22811]
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** [http://www.uniprot.org/uniprot/Q12553 Q12553]
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** [http://www.uniprot.org/uniprot/P08793 P08793]
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** [http://www.uniprot.org/uniprot/P10351 P10351]
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** [http://www.uniprot.org/uniprot/Q7M0I7 Q7M0I7]
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** [http://www.uniprot.org/uniprot/Q7M0I8 Q7M0I8]
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** [http://www.uniprot.org/uniprot/Q7M0I9 Q7M0I9]
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** [http://www.uniprot.org/uniprot/P47990 P47990]
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** [http://www.uniprot.org/uniprot/P47989 P47989]
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** [http://www.uniprot.org/uniprot/Q00519 Q00519]
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{{#set: direction=REVERSIBLE}}
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{{#set: common name=xanthine dehydrogenase}}
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{{#set: ec number=EC-1.17.1.4}}
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{{#set: gene associated=Ec-20_000230|Ec-20_000210}}
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{{#set: in pathway=PWY-5497|SALVADEHYPOX-PWY|P164-PWY|PWY-6596|PWY-6607|PWY-6606|PWY-6999|PWY-6608|PWY-5695|PWY-6538}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 20:50, 21 March 2018

Reaction RXN0-901

  • direction:
    • REVERSIBLE
  • common name:
    • xanthine dehydrogenase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 xanthine[c] + 1 H2O[c] + 1 NAD+[c] <=> 1 NADH[c] + 1 H+[c] + 1 urate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5497, purine nucleobases degradation II (anaerobic): PWY-5497
    • 8 reactions found over 24 reactions in the full pathway
  • SALVADEHYPOX-PWY, adenosine nucleotides degradation II: SALVADEHYPOX-PWY
    • 5 reactions found over 5 reactions in the full pathway
  • P164-PWY, purine nucleobases degradation I (anaerobic): P164-PWY
    • 4 reactions found over 17 reactions in the full pathway
  • PWY-6596, adenosine nucleotides degradation I: PWY-6596
    • 6 reactions found over 8 reactions in the full pathway
  • PWY-6607, guanosine nucleotides degradation I: PWY-6607
    • 2 reactions found over 4 reactions in the full pathway
  • PWY-6606, guanosine nucleotides degradation II: PWY-6606
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-6999, theophylline degradation: PWY-6999
    • 2 reactions found over 9 reactions in the full pathway
  • PWY-6608, guanosine nucleotides degradation III: PWY-6608
    • 2 reactions found over 4 reactions in the full pathway
  • PWY-5695, urate biosynthesis/inosine 5'-phosphate degradation: PWY-5695
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-6538, caffeine degradation III (bacteria, via demethylation): PWY-6538
    • 2 reactions found over 7 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=RXN0-901&oldid=29689"